FastQCFastQC Report
Sat 31 Dec 2022
SRR5847484.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847484.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187765
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGC11480.6114025510611669No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGCCGTCT6920.36854578861875215No Hit
AATCGGGGATGATGATTAAAACTACAGGTGGTATGAAGAACGGCTTATAGAG2920.15551354086224803No Hit
AAGTTGGGGACATCTGCAAACTGTGCATCTGACAAAGGTTTAATAACCAGAA2350.1251564455569462No Hit
TCGACGGGGCCAGACAGAAAGCTGACAGTCTGTTCTTTGTAAACTGCCTTTC2090.11130934945277342No Hit
ATCTATGGGATGTGGCATACAGTGCTAATTAGATTTCATTTTTAAGAAATGT2030.10811386573642584No Hit
GGTCACGGGACGAATATATATTATTTACAGATTCCTTCTCTACTACCCATTT2030.10811386573642584No Hit
TAAAGCGGGATAGCTGCTTTTATGTTCTGGTACACTGAGCCTAAATTCTAGG2010.10704870449764334No Hit
GAGGCATGGGGGGTGATTAAATTATCATTTCCAAGGTGCAAGTGTTTATTTT1920.10225547892312198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)