FastQCFastQC Report
Sat 31 Dec 2022
SRR5847483.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847483.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187584
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGC10860.5789406345957011No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGCCGTCT6630.35344165813715456No Hit
AATCGGGGATGATGATTAAAACTACAGGTGGTATGAAGAACGGCTTATAGAG2900.15459740702831798No Hit
GCTCATTGGGGAATGGACATGTGGCATTGGAGTTTAAGGTGTAGACTGGAAC2140.11408222449675878No Hit
ATGACCGGGTTCTTAAAAAACATAGGTAATAGAAAATATACACAAGTCAGAA2060.10981746844080519No Hit
AAGTTGGGGACATCTGCAAACTGTGCATCTGACAAAGGTTTAATAACCAGAA2050.10928437393381099No Hit
ATAAGTGGGAAGTAAGGAAAATTGGAGTTAGGGGATTATAGGATACGTATAT2050.10928437393381099No Hit
TAAAGCGGGATAGCTGCTTTTATGTTCTGGTACACTGAGCCTAAATTCTAGG2020.10768509041282838No Hit
GGGCAGGGGCGGGACGAGCCTCCGGAGAGCTACCCGCAACGACAGGACCACG2010.10715199590583419No Hit
CATTTGGGGAGTCTTAAGGAAAGAGTCAAAAATCAGACATACCGAAAATAAT1900.10128795632889799No Hit
GTCTGTGGGAGCCTAAACATACATTGCTAATAGCAGAATTTCAAATAACTGA1890.10075486182190378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)