FastQCFastQC Report
Sat 31 Dec 2022
SRR5847482.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847482.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences186580
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGC10750.5761603601672205No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGCCGTCT6660.35695144174080823No Hit
AATCGGGGATGATGATTAAAACTACAGGTGGTATGAAGAACGGCTTATAGAG2760.14792582270339802No Hit
AAGTTGGGGACATCTGCAAACTGTGCATCTGACAAAGGTTTAATAACCAGAA2150.1152320720334441No Hit
TAAAGCGGGATAGCTGCTTTTATGTTCTGGTACACTGAGCCTAAATTCTAGG2130.1141601457819702No Hit
TCTATAGGGGAAGGTGGAGATGGTTACATTCTTCACTGCTTTTTGCATTTTG1980.10612069889591597No Hit
GTCTGTGGGAGCCTAAACATACATTGCTAATAGCAGAATTTCAAATAACTGA1890.10129703076428341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)