FastQCFastQC Report
Sat 31 Dec 2022
SRR5847478.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847478.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127582
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGC4300.33703814017651396No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGCCGTCT3940.30882099355708487No Hit
TACTGAGGGAGGTTTATAGATGGCTACCTTTTAGATACTTTTTATAACATCA1620.12697715978743082No Hit
GAGTCATCTGACACTGATGATGAAGAATTACGGCATCGAATCCGGCAAAAAC1550.12149049238920852No Hit
TAGCGAGGGGAAAGTTAAGCAGAGAAATCATAGCCATGGAATAACATACATT1470.11522001536266872No Hit
GTAAACGGGCAAAAAGAAAAGAAAAGAAAGAAAAGAAACAAACAACCGTCAA1390.10894953833612891No Hit
GAACAGGGGATTTTGCACCATGGATGTAGCTATTGGTCTTATGTGGGGCCAA1370.10738191907949397No Hit
GATTTAGGGACTAAAGAACATTGGTCTGGGCAAAGATTTCATGAACAAGATC1370.10738191907949397No Hit
AGCCGGGGGTGAAATGATGAGATGAAGTGAAATGATGAAATGAAATGAAAGA1340.10503049019454154No Hit
CTGCATGGGCAAAACCACAATGTGATACCACCTCCTGAAAGAATGGCCATAA1320.1034628709379066No Hit
CCAATGGGGTTGTTAGGTTCTTGGGAATAGGACCTGGATATCTTGGGGGCCA1300.10189525168127166No Hit
AGCCTGGGTGACAGAGTGAGACTCCATCTCAAACAAAAACAAAAACCATTAG1290.10111144205295418No Hit
TTGACTGGGGGGCACAGAGCCGCGGCTTGCTTTCATGACACGGGTCGCTGGC1280.1003276324246367No Hit
GCCACTGGGGTAACCTTAAGTGTCAATGGGCTAAATGTACCAATTAAAAGAC1280.1003276324246367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)