FastQCFastQC Report
Sat 31 Dec 2022
SRR5847466.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847466.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences194707
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGC8160.41909124992938107No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGCCGTCT7930.4072786289142147No Hit
TTGGAAGGGTATCTTGAAACATCTAAAAATAAAATAATTACTGGTGATAGGT2480.1273708700765766No Hit
CGCAGTGGGGGAGCGGGCCCAGCAGGTGGCAGTGCAGGAGCAGGAGATCGCC2370.12172135567801877No Hit
CACGAGGGGACATGTCGGCGTGCAGAATTACTACTCGAATCACTGTTTGCAT2200.11299028797115665No Hit
GTGTGTGGGCGGATGCTGCGGAGACACACGGTAGAGGATGCGGTCGTGTCCC2150.11042232688090309No Hit
TAATGGGGGCAGTTTGAATCGCGGTGCGACGAAGGAGTAGGTGGTGGGATCT2130.10939514244480168No Hit
CTTGTAGGGGATATAAAAACAGCTGCGGAAAAAACAGCTACAGACAAGAAAC2090.10734077357259883No Hit
TGTACTGGGGATCACACCACTGCACTCTAGCCTGAGCGACAGAACAAGATCC2040.10477281248234527No Hit
TACTTCGGGGGTTGTCTTATTTTTATCACTAAGTTGATTGCAAGGTTTTTGT2040.10477281248234527No Hit
CTCTCAGGGATGCCAGTCAAAAGTAAAAACAGAATTTTTTATTGCTTTCCAT2030.10425922026429456No Hit
ATAAGCGGGAGATGGAATCTACTGCTGTTAAAGATGCTGTGAACATTGTTAC2030.10425922026429456No Hit
TTAGCTGGGGCACTCAAAGTATTATGTTTCTTTTTCCCTATTCTAACTCAGC2000.10271844361014243No Hit
ATTTCTGGGTATTAAATTATTTTTAAATTATGTTTTATTGTAGACCTCACAA1980.101691259174041No Hit
CGAAATGGGACGTTACCACAATTGTCCAGCCAATAAGTAGTCACAGAAGGTT1960.10066407473793956No Hit
TCTAGAGGGAATACAACCCAATCACCCCCAAATAAGACAGAAATAAAACAAA1950.10015048251988887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)