FastQCFastQC Report
Sat 31 Dec 2022
SRR5847465.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847465.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences193420
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGC8570.443077241236687No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGCCGTCT7120.3681108468617516No Hit
CGCAGTGGGGGAGCGGGCCCAGCAGGTGGCAGTGCAGGAGCAGGAGATCGCC2770.14321166373694552No Hit
TTGGAAGGGTATCTTGAAACATCTAAAAATAAAATAATTACTGGTGATAGGT2700.13959259642229344No Hit
AACCCGGGGGTTCTGATTACATGGAGGGATTGGCACAATCAAAGCACAGAAC2190.11322510598697134No Hit
TAATGGGGGCAGTTTGAATCGCGGTGCGACGAAGGAGTAGGTGGTGGGATCT2180.11270809637059248No Hit
TACTTCGGGGGTTGTCTTATTTTTATCACTAAGTTGATTGCAAGGTTTTTGT2170.11219108675421363No Hit
TGGACTGGGACCATAACCACCACCACAATCAAGATATAGCATATATCTATTA2140.11064005790507704No Hit
CGCTATGGGGGAATTCACTTTATTGTAGAAAAACCCAAACTGAGACTCTTAA2100.10857201943956157No Hit
TCAACCGGGTTCTGATTGAGATTGCATTGATTCTGTATATTGACTTGATTGA2100.10857201943956157No Hit
GGACCGAGGGAGGACTTGGGAAAAAAGGACCACATAGTCCATCGAAGAAGAG2060.10650398097404612No Hit
CTTGTAGGGGATATAAAAACAGCTGCGGAAAAAACAGCTACAGACAAGAAAC2050.10598697135766726No Hit
GTGTGTGGGCGGATGCTGCGGAGACACACGGTAGAGGATGCGGTCGTGTCCC2050.10598697135766726No Hit
TGAGAGTGGGATTCACTTTAGGTAAGAGCTACTTTTTGGGTTGGCTTTATGT2030.10495295212490953No Hit
ATAAGCGGGAGATGGAATCTACTGCTGTTAAAGATGCTGTGAACATTGTTAC2020.10443594250853065No Hit
TACCCTGGGATGATATCATGTGCTATTTTGAATTTTTAAAAGAATGTTACAG2000.10340192327577293No Hit
TCTAGAGGGAATACAACCCAATCACCCCCAAATAAGACAGAAATAAAACAAA1980.10236790404301521No Hit
AGTACTGGGAAGCTAAATGTTATTACAAGAGTCAAAAATATTTAAAAAATGA1960.10133388481025746No Hit
TACAAGGGGTATTAAACAATTTGTTGTTCATTAAGTGTCGTCCCCAGAAAAG1950.10081687519387861No Hit
TAACATGGGGCTCCGGGAACCGCAGATTATGGTTAATCCAATTCTGTGCACC1950.10081687519387861No Hit
AAGCAGGGACAATTGTGTCTGTAGGTATAACACCCTTTCAAATACTTTTCCA1940.10029986557749974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)