FastQCFastQC Report
Sat 31 Dec 2022
SRR5847464.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847464.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences191844
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGC8350.43524947353057697No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGCCGTCT7310.38103876065970266No Hit
TTGGAAGGGTATCTTGAAACATCTAAAAATAAAATAATTACTGGTGATAGGT2580.13448426846813036No Hit
CGCAGTGGGGGAGCGGGCCCAGCAGGTGGCAGTGCAGGAGCAGGAGATCGCC2330.12145284710493942No Hit
CTTGTAGGGGATATAAAAACAGCTGCGGAAAAAACAGCTACAGACAAGAAAC2180.11363399428702488No Hit
TGAGAGTGGGATTCACTTTAGGTAAGAGCTACTTTTTGGGTTGGCTTTATGT2160.1125914805779696No Hit
TAATGGGGGCAGTTTGAATCGCGGTGCGACGAAGGAGTAGGTGGTGGGATCT2080.10842142574174851No Hit
AGTACTGGGAAGCTAAATGTTATTACAAGAGTCAAAAATATTTAAAAAATGA2070.10790016888722086No Hit
TTATAGGGGAACTGAACAAGAAAATAAAAAGGGGAAAAAAGTGACACACAAA2060.10737891203269323No Hit
CACCCACGAGCACATTTTGTTGGCTCTACCTGCAAACTGCATTCAGGATTCA2030.10581514146911031No Hit
TTAGCAGGGTGGACCGGAAGCGAAGATGGCGACTTCTGGCGCGGCCTCGGCG2020.10529388461458268No Hit
GGACCGAGGGAGGACTTGGGAAAAAAGGACCACATAGTCCATCGAAGAAGAG1970.1026876003419445No Hit
CGAAATGGGACGTTACCACAATTGTCCAGCCAATAAGTAGTCACAGAAGGTT1950.10164508663288922No Hit
GCAATTGGGGATCTCTCGGGTCACTTCCATTTCTAACCTGGGAACTCTGTCA1950.10164508663288922No Hit
GTGTGTGGGCGGATGCTGCGGAGACACACGGTAGAGGATGCGGTCGTGTCCC1950.10164508663288922No Hit
TTAGCTGGGGCACTCAAAGTATTATGTTTCTTTTTCCCTATTCTAACTCAGC1950.10164508663288922No Hit
TGGACTGGGACCATAACCACCACCACAATCAAGATATAGCATATATCTATTA1950.10164508663288922No Hit
GGGTGCGGGAATGATAAAATTTACTAAGTCTTTCAGGCAATGTTTAAAATTT1920.10008131606930631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)