FastQCFastQC Report
Sat 31 Dec 2022
SRR5847452.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847452.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179060
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGC10460.5841617334971518No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTGTATATCTCGTATGCCGTCT9610.5366916117502513No Hit
ACGTTCGGGTCAGCATCGTTGCCCATGGTTGGCACTCAGTAAACGTTGGTTG2670.1491120294873227No Hit
ACACTGGGGACTGTAGCTTTGTAGTAAGTTTTGAAGTCAGGAAATGTGAGTC2280.12733162068580364No Hit
TCTACGGGGACATTAAAGAAACTTCTTGCTCTAATAGTTATGTGTATGATAC2170.12118842845973417No Hit
GCCCTTGGGATCCCTAAGTCTTACTAAACACATTCAAGGAGAAATGGGGAAG2160.1206299564391824No Hit
GTGATAGGGAATTTGGACACAGAAAAATAAATGTATAGGGAGATAACTGTAT2080.11616218027476824No Hit
GTAATGGGGAAGTATTCTTCACGGCAGCCAGAAGTTAATGGTGGTAGCAGCT2060.1150452362336647No Hit
TCCGTGGGAAATATTAAATATTCAATGAATGATAGCTGCCTCTACTTCTCCT1930.10778509996649169No Hit
TACGCAGGTCAGACACGAAAACCAGAACTGCATCAGGATATGGTGGTACCAG1880.10499273986373282No Hit
TCCAAGGGTAACCTGAAATTTACTGCTATTTCAAATTCTACTCAATTTAGAG1860.10387579582262928No Hit
GGACACGGGATTGTGAATACTTAATATATAACATCAAAAACTACAACTCCTA1850.10331732380207753No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)