FastQCFastQC Report
Sat 31 Dec 2022
SRR5847434.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847434.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84337
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCCGTCT12141.4394631063471548No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGC10621.2592337882542655No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCTTATAC2570.3047298338807404No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCT1690.20038654445854132No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTC1650.1956436676666232No Hit
TTCAGCGGGAGTCACAAGAAGTGGTGGAATGTTACGAGAAGCTATTGATTAA1450.1719292837070325No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCA1200.14228630375754414No Hit
AATTTAAGGGCTTCTACAAATGCTGTGACAATGACAATTCTGTGAACACCTA1150.13635770776764647No Hit
GATACACGGGAGTGATTGATGACCTCGATATGGATTTAGATTATCAAATGTG1120.13280055017370787No Hit
TATGAGGGGATTTTCTTTGTATAAACACTTCTACCTTCAAATTGTGTCATTA1060.12568623498583065No Hit
GTAGAGGGGCGATCTGTAAGGGGACTCATGTTAAATTTGGGTTTAAACTGTC1040.12331479658987159No Hit
AATGCCGGGGACAGAATCTCCGTGTGCTTTGGTGGCCAGCCAGTACGGATGG1010.11975763899593299No Hit
GTTCACGGGGTGCCTTTGGGACATTCAAGAGTGGATATCAAGTAGACTGTTG980.11620048140199438No Hit
GTGTGCGGGTAATAGACCCTATGTCATAATGGCACTTTAGTGTATTGTTCTG960.11382904300603532No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTATACAC950.11264332380805576No Hit
AAATGGGGGAGCCATTGCTGTAACAACCTTATTTTCCACTAAGTCAGAATAA880.10434328942219903No Hit
TTTGTGGGGACTCCATACATATTCTCTTATTAACTAAGACAGGTATGTGAGA860.10197185102623996No Hit
CTGCTTGGGTGACAGTGCTTTATGAGCCTTAAATTCGGCCTCAGCTTTCTCC860.10197185102623996No Hit
TAAATCGGGACTACGTTTTATGTTGTTCTTTCTAATGACTTTTTTTATGTGT850.10078613182826043No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)