FastQCFastQC Report
Sat 31 Dec 2022
SRR5847428.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847428.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences286863
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGC40331.405897588744453No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCCGTCT40091.397531225707045No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTC5040.17569362378557013No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCTTATAC4940.17220763918665008No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCT4090.14257677009582972No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCA3140.10945991640608932No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)