FastQCFastQC Report
Sat 31 Dec 2022
SRR5847426.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847426.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90582
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCCGTCT22412.474001457243161No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGC18031.990461681128701No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCTTATAC4150.4581484180079928No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTC3980.43938089245103884No Hit
TAAACGGGGGTAGAATACAATGCATTGTTAGTCATGATTTCCATAAAGCTTC2790.3080082135523614No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCT2740.3024883530944338No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCA2170.23956194387405885No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGT1610.17773950674526948No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTATACAC1510.16669978582941422No Hit
CAAACCGGGCTGCACATCCTAGCAGCAGTAGCACCATATGTGACTTTGGGGT1390.15345212073038794No Hit
AGTTTGGGAAGATAAAGTCTCTGGATCTAATACGTAAACAAAGTTGTGATGC1370.1512441765472169No Hit
ATAAATGGGGTATCCTTAAGGTTATAACTGAAAGAAATTGGATTTAAAGATT1360.15014020445563137No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCAT1330.1468282881808748No Hit
GTTCCAGGGTGACACTGTTCCCACACTGAGTTGTTTTGGCTGCAGGGGTGGG1260.1391004835397761No Hit
CTATGGGAAAATTGTTATGTGTGATTTGATCCTGTCATCATGATGCCAGCTG1210.13358062308184848No Hit
AATGATGGGGAAGGAGTGAAGTTCGATGAAAGTGAGAAAACTAAGGAGAGTC1210.13358062308184848No Hit
CGGTAAGGGATGGCAAAAATACTTCCCTGAGAATAAAGGCACCTAAGCTCTG1180.13026870680709193No Hit
AAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTC1140.12585281844074983No Hit
CATCGGGGGAAGGAATAGCAGCTTATGAAATCTTTTTTTAATAGTCAGATGA1120.12364487425757878No Hit
CACAGAGGGGGGAGTGGCTGTGGCAATTTCTTAAAATAAGACAACAATGAAG1100.12143693007440773No Hit
CAGCGGGGGAGACACAAGCTCATAGGTGGAATGAACGTGACTTGGGTATCAG1090.12033295798282219No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGT1070.11812501379965114No Hit
TCTAAACGGGGGGTGTCCCCAGACCTCTAACCCTTGCCCCTAGCAGCCTCTT1070.11812501379965114No Hit
AAAGCAGGGAACATGATGCAATCTTGTTATTGTGATTTTCAGGATTTTAGAC1030.11370912543330904No Hit
ATGCTGGGGATCTCAGTATGGGATTGGAAAGGAAGAAGTAAAACTTTCTGTT1010.111501181250138No Hit
TATTTGAGGGGATCTTGAGTAGGGTAATCTTGTTATTATAATTGAAATGGTA990.10929323706696695No Hit
TCAGCTGGGGCAGTGAGGGAAGAGATAACCAAAATATTGCATCCTGATTAGT980.10818926497538142No Hit
CGCTTGGGGGCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTG960.10598132079221037No Hit
AAAAGTGGGGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAG950.10487734870062485No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCC950.10487734870062485No Hit
GAGCAGGGGGAGTCTCTTTTTCATGGTGTCAATCTTCATTTGCTTGGTGATA940.10377337660903932No Hit
TCTCTTGGGCTTCCGATCTGCGGTAGGGGGACTGAAAGAAGTAAATTATAAT940.10377337660903932No Hit
CACTAGGGCTGAAGGATCATCTATGTATTCAAGTAATTATTTTTTAGATAAT940.10377337660903932No Hit
TATCGAGGGTCATATATGTGGTCTGTTTTTGACTGAAATGATGTCATGTGGT920.10156543242586828No Hit
GGGTATGGGTAACTTTTGTCAAAGAAATACTCTCAGAAGAGAAATGGGGCTT910.10046146033428276No Hit
ATCTATGGGTAGCTAGGGGGGCCCCTAACAGAGATTTGGCCCAGAAAAGAGA910.10046146033428276No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)