FastQCFastQC Report
Sat 31 Dec 2022
SRR5847417.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847417.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84502
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCCGTCT27713.2792123263354713No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGC24892.9454924143807246No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTC5600.6627062081370855No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCTTATAC4110.4863790206148967No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCT3330.3940735130529455No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCA3090.36567181841849894No Hit
CTTCAGGGGGTCAAGGTTATAGTGAGCTATGATTGTACCATTGCACCCCAGC2450.2899339660599749No Hit
AAATACGGGATTAATCAAAGTTCTTGTCTTCTGATAACTGAATACCCCACCA2100.24851482805140707No Hit
AAGCTTGGGGGAATTTGTAATAAGTTCATTTAATATACTCTTGCTCCAGGGA1870.22129653736006247No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCAT1740.20591228609973727No Hit
ACAGTAGGGTGAGCAACTATATACCAAAAAGTTAGAAAACCCAGAAGAAATG1590.18816122695320822No Hit
TTGTAAGGGGGTGAGAGGAGGCTGCAACGCCGAGCGGAGGAGGCAGGAACCG1480.1751437835790869No Hit
CTTGTGGGGGAGGTCACTGACTTAACCAAAGACACCAGGTAGTATATGTTAT1460.172776975692883No Hit
ATCCCAGGGCCTTTGTCCTGCCTTTCCCTCAGCACTAGCTATTGTACTTATC1450.17159357174978107No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTATACAC1440.1704101678066791No Hit
GTAATAGGGACATGGAACCACAAAATACCAAAATAGCCAAAACTATCCTGAG1400.16567655203427137No Hit
ATACATGGGTATCAATAGAAACCTACAAAACTGACAAGCTAAGAGAGCAAAG1380.16330974414806748No Hit
TCACTCGGGCCATATATATAATATGAATTGTGATCACTGCTACTTTTATAAA1310.15502591654635395No Hit
GCCTGCGGGCATATTTGTAGTCTATCACGAACTGGAACATTATTATGCAATG1310.15502591654635395No Hit
ATCTCTGGGAATAGTGGGAGACTTTAACACCCCACTGTCCATATTAGACAGA1270.15029230077394617No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCAACTCGTATGC1260.14910889683084425No Hit
CTACAAGGGCAGGAATTTTAATAAGATTTTGTAAAGAATATCCAGAAAAGTA1260.14910889683084425No Hit
ATGGACGGGTCCTGGCCAGCCTGCAGTCATGCGAGAGCAGTAAAAGCAAGTC1250.14792549288774232No Hit
GGGGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1250.14792549288774232No Hit
TGGACAGGGGTAGCTATTTTTTGTTGCTTGGCTTTTGAATGAGTGTAAATTG1240.14674208894464036No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGT1230.14555868500153843No Hit
ACTATAGGGGCTTTCCGGACCTGGCCGAGCAGGAGGCGCCATCATGGGAGTG1220.14437528105843647No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTA1220.14437528105843647No Hit
AGCATTGGGTGTCTGGAGACAAAGAGAAAGATGAAGGGTAGGAATATGCAAT1210.14319187711533454No Hit
GGTTTAGGGCTGAGACCTTAATGGACAGAATCAAGAAACAGCTACGTGAATG1190.14082506922913068No Hit
CTACCGGGGTCTTGTAACGGGACAGTTCAGGATGTTTTTGCAATTTTCCCTC1190.14082506922913068No Hit
TTTAATGGGGGGTTATTCTGTGGCTGTCGGAGATTTCAATGGTGATGGCATA1190.14082506922913068No Hit
CCGCGTCGGGGAGTGCACTGTGCCACGGAACGACATGCTGACCAGGGTTGGT1180.13964166528602873No Hit
ACTCTAGGGGATATTCTACATAGCATATTGTTTCCCTGTTTAAACCTTAATT1180.13964166528602873No Hit
AAAAACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTC1160.13727485739982484No Hit
TTACAAGGGAAAGTTGGGATATTTGACTTTCATTGTCCTGAGTAAAATAGTG1160.13727485739982484No Hit
TATAGCGGGGTTTGGAACTCTGAAGGATTTAGACAAGGTTTTGAAAAGGATA1140.13490804951362098No Hit
TGATCCCTGAAGAGCCCCCCATATAAAGAACTGTAGAGCTGCACTGACCAGT1130.13372464557051905No Hit
AACAACGGGACGCTCTTCCGATCTTTCGCTGGGAAGTTGATAAAGAATTATC1120.1325412416274171No Hit
TGGTCCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1110.13135783768431517No Hit
ATAAGCGGGGGAGAATAAATGCAGTAATCCTCTCCCAAATAAGCACACACAT1100.1301744337412132No Hit
TAAGAGGGCTTCTGTATTTGGGGCCTATTTATGCCACCAGTAATTTTATAAG1090.12899102979811128No Hit
GCATCGGGGAGAGGACAAATAGTTTATTTAAAGCATTTGTTCCAATAAAATA1090.12899102979811128No Hit
ACGACTGGGGCTGTAAGATCAGAGAAGTTTATAATAATTGAAAACCAGTATT1080.12780762585500935No Hit
GAAAGGGATGAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACA1080.12780762585500935No Hit
CATTGCGGGGTAGGTAAGACAGATTTAGAGATTGAGTCCCATAAAGTTAGAG1080.12780762585500935No Hit
TTAGAGGGGAACAACGAGATTGAATAAATAATGAAAAACTGCCCACAAAGAA1070.12662422191190742No Hit
TACAAAGGGCGATCTGAAATTGGGGTTTTAAGAAAGTCATTATATTTCTGTT1070.12662422191190742No Hit
TTTGGTGGGGAATAAATGCAGTAATCCTCTCCCAAATAAGCACACACATTTT1050.12425741402570353No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCC1050.12425741402570353No Hit
CGTAGAGGGATATCAATAGTAATTACTCTGTTGTCACATGTTTGAATGTATT1050.12425741402570353No Hit
AATCTGGGGGTCTTCAGGATTTGTTAATAAAAGATAATCTTTCTAGAAATAG1040.12307401008260159No Hit
CTAGGGACGACTCTTCTTGGTCAGTTTCTAGAAGACATGGAAGCATATGCTG1030.12189060613949966No Hit
CAATCTGGGCTCTCTCTCCTGGAGCTGAGACATCATCTTCTTCTGCCCTTCA1030.12189060613949966No Hit
TAGCATGGGAACTTTTAGCATGCTGCACAGAAACTGGTATAACATGCCTTCA1030.12189060613949966No Hit
AACGCTGGGCACCACCACTGAAGAGTTTCATATACACCAAATAATGTCTCAT1020.1207072021963977No Hit
TGTGCTGGGTTTATGGTTAAATGCAGTAATTATGGAACATTTTAAAGTGAAT1020.1207072021963977No Hit
ACGGCCGGGATCTGAAACAGGGACTTTGATAAAGGATTAGTAGACATATCAC1010.11952379825329579No Hit
TGTTGAGGGGAATATATGTTTTGTCTCGCTATACTGCACTTACGCTATCCAG1010.11952379825329579No Hit
AACTGGGGAGTAGTTTTCCTTATAAGGAGCATGTATCACTTAGCAAGAAACT1010.11952379825329579No Hit
AAGGTTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1000.11834039431019383No Hit
GACTTGGGGCTAAATAAAAATTAACAGAACAGGAAATCTGTTACAGAAATTT1000.11834039431019383No Hit
TCATTAGGGATAAAACAATGGATAAGATCAGCCAATGCTGTGCTTGCAGATA990.1171569903670919No Hit
TTCGACGGGGGGGAAAGTAAGTCTTTAACAAAGGCTTTTGAAATAAATGCAT990.1171569903670919No Hit
CAATAAGGGAATTTTTGAGAGGATGAAAATTTAAAAAGGAAAGGTCGATTAT980.11597358642398996No Hit
AACGGTGGGAGAACATAGGTTCTCAGTATCTAGAACTTACATCATTATCATC980.11597358642398996No Hit
TACATTGGGAATAGAAACCTTGCCATTTGTATGTACATATTTTAAATTAACC980.11597358642398996No Hit
TTTGCTGGGGATGGCCAAGTGACTGCCTCAAGTAACACAGTAACTGGATGGA980.11597358642398996No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCTGTCTC970.11479018248088803No Hit
TACTCTGGGATCTTGGCTCACTGCAGCCTTTGCCTTCTGGGTTCCAGCGATT970.11479018248088803No Hit
CAGCAGGGGATTGGTGAGGCTTTTATTTCCCTTGAGGAGTCTCTTGTACCTA960.11360677853778607No Hit
CTATAAGGGCAGTATATGTCAGTTCAACTTGAGCATTCTTTTGGATTCTTTG960.11360677853778607No Hit
TATATAGGGGTATTTGAGAAATGAATGAGATGACTTAATGTAGTCTTAACAT950.11242337459468416No Hit
TGCCAGGGGCAACTTGTATGTACCTAATAAAATAATCTCAAACATCAAAAGC950.11242337459468416No Hit
AGGTCAGGGAAAGTATAATATGACCTCAAATCAATGGAGGAATGCTGTATTA950.11242337459468416No Hit
TTAACGGGGCTATCAATGTTTGGATCATCTCAGTGGGGGAAATGACTTAATT940.11123997065158223No Hit
ACTTGCGGGGTGAATGCAAATGTTCCCGATAAATTGTTAAGAAATTAATACA940.11123997065158223No Hit
AAGAATGGGATGTTATAACCAGTATCACTAAAAAAAATCATTGACAGATTTA940.11123997065158223No Hit
ACTTCCGGGAACTTTTCTGCAAGAAATACAAACTTACATCTTCCTTTTACTA940.11123997065158223No Hit
TTGCGAGGGATCTCAAAATCATTGCAGAAACATATCTAGTGCTTATGGAAAA940.11123997065158223No Hit
GATAGTGGGATATCCAGCACACCGAGAAGGTTGATATTGAGAACTGGGACAG930.11005656670848027No Hit
ATGTTAGGGATCGGGAAGCTCTTGCTGGGAAGCTGGAAACACATTGGGTAGC930.11005656670848027No Hit
AGCAATGGGGTGGGAGGGCGGTGGTGAGGGAAGTATCTCCCCAAAGGAAAGA930.11005656670848027No Hit
TCGCTTGGGGGTCTTACACAGAAAGATACATCAAAAGCAGCATGACTCAAAA920.10887316276537834No Hit
GCTAATGGGGCAGAACAAAAAAGTAATTGAAGAAAAGGCTAGGATGATATAT920.10887316276537834No Hit
GTGTACGGGGTGCCTGAGGCACCCATTTCCCTACGTAGCAGCAGCTGGTGAC920.10887316276537834No Hit
CATATAGGGGAAAAAAAGTAGTTTTTATAATCTGAGTTGTATACTGGACCCA920.10887316276537834No Hit
CTATAGGGATACTTATCTGATTATTTAGCACCTTATGGTAGGACCGTGCTGT920.10887316276537834No Hit
CTTAACGGGGTGCCTACTGCCCCTCTAATGTATAGGGGGAAATGTATTCCTA910.1076897588222764No Hit
AACATTGGGGGATGTGATGTGTTACTTCACTTTTTTGTTTTCTGTTCTTGAG910.1076897588222764No Hit
TTCCCTGGGAAGGAAAAATCTTAAATAAGAATTGGGTTTTAATTTTCCATGA910.1076897588222764No Hit
GCGAACGGGATAAGTTTCTGAAATAAACACTTTGTTATCACTTTTGAATTGA910.1076897588222764No Hit
AAATGCGGGATCCTCTGCTGGTGCTAAGTGTGATTAGGAAGAAGCCTGGGGA910.1076897588222764No Hit
AACATAGGGATGTTTCTTAATAATTACTGGAGGTATGCAAATCTTATTTACA900.10650635487917447No Hit
CGAATAGGGGAATTCTTGTGAGTTATTTTATTGTAGTATTTTTCTCTTAGTT900.10650635487917447No Hit
ATGGCCGGGAACACATACACTATGATTAGCAGCTGAATTTAACAGTATCTTT890.10532295093607252No Hit
ATCTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTC890.10532295093607252No Hit
CGGTTCGGGTCGATAACAATCTGTTGGGATGGGTTATGATACCAGTTGTGAA880.1041395469929706No Hit
CTCACTGGGGCAGGCGCAAGCCGGCAAGATGGCGGCGGCTGGGGCTGGCCGT880.1041395469929706No Hit
AGTAGTGGGACTTGCTGATATTTTGTAGTTTGGAGATCCTTGTGGGCATTAT870.10295614304986864No Hit
TGCAGGGTCTGTAGGTGGGATTCCAATTCAGAATGCATCACAAAAACGTAAA870.10295614304986864No Hit
AATGTTGGGCATGAATCTTGAGTACGTGGACCATTGCTTGCATGTTAACTTT870.10295614304986864No Hit
AAACCAGGGAATTCTGTACTGTATAAATGAGATCCATTATTGGGAATAAAGT870.10295614304986864No Hit
CTTGAAACGGGATGAGGAGGAAGGAAGTGAAGATGTCTGGGAAGAAGGGGAA860.10177273910676671No Hit
TACCGGGTTCACGGGTGTGGGAGCCACGCTGGAAAAAAGATGGAAGTTGTGT860.10177273910676671No Hit
GAGGTAGGGATGGGGTGCTTTACTTAAACCAAGGTGCCTCGGGGCCAGTGCT860.10177273910676671No Hit
CTGCTGCGGGGCATCTTTCAGTTTGTGTATATTCTATATATACGACTTCACC860.10177273910676671No Hit
CGAACTGGGACTCGCGTCTGGCTACCAGCTCCCCGCTGCCCTGAGCTCGGCG860.10177273910676671No Hit
AGGCATGGGTGGCTATTTTATTTATGTGAGACTCTAAACCTGATTGTCCTAA850.10058933516366476No Hit
AGCGATGGGGGAAGCCCGCCCGGTGGCGGCTGGGGTCGGCTGCTGGGAGGAG850.10058933516366476No Hit
ATGTCTGGAGGGCAAATACAAATTAGAAATACCAGACTTAAATTATGAAACT850.10058933516366476No Hit
CGTTAAGGGGGCTTCAGCATTAGTAATACACTAATGTAATGGTAAAATTTGC850.10058933516366476No Hit
TGCGTTGGGTGCACCGGGATTTTCGAAATACCAGTATTTCGACTCCAGGGGG850.10058933516366476No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)