FastQCFastQC Report
Sat 31 Dec 2022
SRR5847415.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847415.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84929
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCCGTCT24952.9377480012716504No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGC19472.2925031496897406No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTC4270.5027729044260499No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCTTATAC3970.4674492811642666No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCT2670.314380247029872No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCA2430.2861213484204453No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCC1940.2284260970928658No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTATACAC1460.1719082998740124No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCAT1440.16955339165656017No Hit
CACATCGGGCATCAGCAGCATTTGTCATAGTTGAACACTCCTTTCTCCTAGA1300.1530690341343946No Hit
CGTCCGGGATGCTTTTCCTTTTTTAGTAACAGAGTATTACCTTTTTTAAAAT1170.13776213072095514No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGT1070.12598758963369402No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGT1020.12010031909006347No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTA1010.11892286498133735No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCAACTCGTATGC980.11539050265515902No Hit
ATATGTGGGGGATTTTTCTGTGTATCAGTGTAGCATGCCTGATCAGCTTTCT900.10597086978535013No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCTGTCTCTTATA890.10479341567662401No Hit
TTCCTTGGGGTCTTCAGGTATGTTACCTTGACCTCCTACTGCACTCTTCTCC870.10243850745917178No Hit
CGTTCAGGGCATCAGAGTTCCCCCTTGCTGAAGAGTGAGTTAGTGAAAGAAG860.10126105335044568No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCACCTCGTATGCCGTCT850.10008359924171956No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)