FastQCFastQC Report
Sat 31 Dec 2022
SRR5847413.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847413.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83437
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCCGTCT24622.950729292759807No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGC19372.321512039023455No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTC4740.5680932919448206No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCTTATAC3690.4422498411975503No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCT2830.3391780624902621No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCA2190.262473482987164No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCC1830.21932715701667127No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCAT1400.16779126766302718No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTATACAC1300.1558061771156681No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGT1130.13543152318515767No Hit
CACATCGGGCATCAGCAGCATTTGTCATAGTTGAACACTCCTTTCTCCTAGA1070.1282404688567422No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCAACTCGTATGC1050.1258434507472704No Hit
ATATGTGGGGGATTTTTCTGTGTATCAGTGTAGCATGCCTGATCAGCTTTCT1040.12464494169253448No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTA980.11745388736411903No Hit
TTCCTTGGGGTCTTCAGGTATGTTACCTTGACCTCCTACTGCACTCTTCTCC960.11505686925464723No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGT950.11385836019991132No Hit
ATCTGAGGGGAGAGGTCAGACTCTTCAAAGAATACACCATCATGAGAATTTT950.11385836019991132No Hit
CGTTCAGGGCATCAGAGTTCCCCCTTGCTGAAGAGTGAGTTAGTGAAAGAAG940.11265985114517539No Hit
GCTTGGGATTTTCCCTGCCTCTAGTTTTGACCTGTTTTTCTAATCTTGCTTT890.10666730587149587No Hit
CGTCCGGGATGCTTTTCCTTTTTTAGTAACAGAGTATTACCTTTTTTAAAAT850.10187326965255222No Hit
CACAATGGGCAGACCCAAGAATGTGAATATAGAAACTAGGAAAGGTGGGTTG850.10187326965255222No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)