FastQCFastQC Report
Sat 31 Dec 2022
SRR5847408.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847408.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences261449
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCCGTCT44571.7047301768222483No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGC34371.3145967282338047No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCTTATAC6360.2432596797080884No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTC5710.21839823445490325No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCT5380.20577626994174775No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCA3990.15261102547724412No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGT3480.13310435304782195No Hit
ACATAAGGGAAGTTAGTCACTAATTATAATGAATATACAGAATAAAAGAAAC2840.10862539156776274No Hit
CCCAGGGGGAATGCAGAAAGGAAATATTGCCAAAGAAATTAAAGAAGTCTTA2800.10709545647525905No Hit
CCAACCGGGAAAATTGGAAGCGACACCTTAAAAAGAACTTTGTGGGAAGAAA2740.1048005538365035No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)