FastQCFastQC Report
Sat 31 Dec 2022
SRR5847403.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847403.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences136714
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCCGTCT48273.5307283818774957No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGC40042.928741752856328No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTC5970.43667802858522164No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCTTATAC5520.40376259929487834No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCT4120.30135904150269904No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCA4010.29331304767617067No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCC3810.2786839679915737No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTATACAC2260.16530860043594658No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCAACTCGTATGC2220.16238278449902718No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCAT1730.12654153927176442No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGT1690.12361572333484501No Hit
CGCAAAGGGGGCAGATAACAAATTAAAAAACAAATGAGTCAGTTCTTGAAAA1550.11337536755562708No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTA1470.10752373568178827No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCACCTCGTATGC1450.10606082771332855No Hit
TAAATAGGGACAGTCAAGGGCATAACATTTTACGATTCAGTAAAAGCAATTC1400.10240355779217929No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)