FastQCFastQC Report
Sat 31 Dec 2022
SRR5847402.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847402.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences136018
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCCGTCT48553.569380523166051No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGC40692.9915158287873664No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTC6160.45288123630695937No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCTTATAC5450.4006822626417092No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCCTGTCTCT4140.3043714802452616No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCA4140.3043714802452616No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGTATGCC3370.24776132570689174No Hit
CTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTATACAC2070.1521857401226308No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCAACTCGTATGC1920.1411577879398315No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCATCTCGT1690.12424826125953918No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCAT1670.12277786763516593No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACCTTTCACTGTCTCTTA1660.12204267082297932No Hit
TAAATAGGGACAGTCAAGGGCATAACATTTTACGATTCAGTAAAAGCAATTC1520.1117499154523666No Hit
CTAAAGCCGGGGACATACTCATATGAAAAAATATCTCTGTGAAATAAAGCAA1400.10292755370612713No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)