FastQCFastQC Report
Sat 31 Dec 2022
SRR5847370.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847370.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162310
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGC7370.454069373421231No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGCCGTCT5190.3197584868461586No Hit
GGGTCTGGGACCAAATTACCTTTGAAAAATCCCTAACCTCCAAGCCTTAGAT1900.11705994701497134No Hit
ATAAATGGGTAGACGATGGTTTTAGATGATAACCACAGGTCTACAAGAGCGT1850.11397942209352473No Hit
TGAACGGGTTACACGAATTGAATGAGTAAAAGCTTTCACGAGAAGTGTTTGG1830.1127472121249461No Hit
CGTTGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1760.10843447723492083No Hit
AACGCTGGGCTCATTTGTCTTAATTATTTGGTAAGTGGGATTATGATGAGTA1720.10597005729776354No Hit
TTAGCAGGGAACATTTTCTGTTTTTTCACAGAAATCTAGTATTTTTTTTTTT1710.10535395231347422No Hit
GCCGTTGGGCAGACAACATCTGCTCATGAAAAGTCTTTAGGGAATTAGATCT1660.10227342739202759No Hit
AGCATGGGTCTTGCAACTTTACTAAATTCGTTTATCAGTTCTAAGAGTTTTC1660.10227342739202759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)