FastQCFastQC Report
Sat 31 Dec 2022
SRR5847369.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847369.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences161765
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGC6710.4147992458195531No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGCCGTCT5340.33010849071183507No Hit
GGGTCTGGGACCAAATTACCTTTGAAAAATCCCTAACCTCCAAGCCTTAGAT2060.12734522300868542No Hit
CGTTGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1760.10879980218217786No Hit
TGACGCGGGAAAGGAAGCTATATTTTCTAATGCTTCTGTTTCTTTGCTAAAA1680.1038543566284425No Hit
CTAGTAGGGTCAATGTGAAAATCCTGGTTGGGATATTGTACTGTAGTTTAGC1640.10138163385157481No Hit
GCGTTCGGGTGACTCAAAAAATCAAGTCCTTTGCCTCAGTTAAGTAGAATGT1620.10014527246314096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)