FastQCFastQC Report
Sat 31 Dec 2022
SRR5847368.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847368.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences161109
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGC6330.39290170009124253No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGCCGTCT5080.3153144765345201No Hit
CGTTGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA2030.1260016510561173No Hit
ACATGGGGGGGGACCTTTTGCCTCGAGGCTGAGCTGGAAAATCTTGAAAATA1930.11979467317157948No Hit
GGGTCTGGGACCAAATTACCTTTGAAAAATCCCTAACCTCCAAGCCTTAGAT1830.1135876952870417No Hit
AGCATGGGTCTTGCAACTTTACTAAATTCGTTTATCAGTTCTAAGAGTTTTC1710.10613932182559634No Hit
TTAGCAGGGAACATTTTCTGTTTTTTCACAGAAATCTAGTATTTTTTTTTTT1700.10551862403714254No Hit
TAACTGGGCACAAGAGTGTTTAATGGGGACAGTGGGCACTCTCCTGCTTGAA1650.10241513509487365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)