FastQCFastQC Report
Sat 31 Dec 2022
SRR5847356.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847356.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124668
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGCCGTCT4670.3745949241184586No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGC3780.3032053133121571No Hit
CTAGAGGGGGATGAAGAGGGCATCATTGAAGGATTTTAAACAGGAAAGTTTC1680.13475791702762538No Hit
CACATTGGGATAGGTGCACTGTAGACAATAGATTACAGGAGAGAGATTTTGA1620.12994513427663876No Hit
TTAGTAGGGGAAGAAAAGTGGCATAGTTGATTGGGCTATTTTGCTCTTAACC1490.11951743831616773No Hit
ATGCCTGGGATGAACAGGACGTTGACAAGAGGTTTGGGAACACTGAAGAAAT1430.11470465556518111No Hit
TAGCACGGGAAGATATAATTTCCAAGGGATTTGACTTTTTTCCTACTCTATC1390.11149613373119005No Hit
TAATTAGGGATTTTTAAGAAAGAAAATTGCATTGATACTAAATATTGTGGCA1390.11149613373119005No Hit
CGCTAGCGGGTAATACTCAGTATGCACAAAAATCATGTGTAGCACTTGTAAA1380.11069400327269228No Hit
GTCGCCGGGATAAACCACTGGGCTAAGTACACAGAGGGAGAGGCTAGCAGTA1370.10989187281419449No Hit
ATCACAGGGATTCCTGGATGCATTTTGCTTTTTATTAGTTTCCAGATAAAAA1350.10828761189719896No Hit
GCAATCGGGTACCCCGCTGCACCAAATCAAGTAGCTTCACCTTGTGTATGCA1350.10828761189719896No Hit
GCTAGTGGGAAGGCTGATCAGATTACTGGTCACCACCAAATAATTGTTGATT1340.1074854814387012No Hit
GTAATAGGGCTCGTCTTTTCTACTCTTTTATGATTTTGTCATTAATTTCAGT1330.10668335098020343No Hit
TTCGCATGGGGGAAAATGTAAATGAGTAGACTTTTATATATGATTGATAGAT1320.10588122052170566No Hit
GCTAATGGGATAGTTAGGCACATAATTGTCATATGATACATATTTGCTGATT1310.10507909006320787No Hit
CATCGCGGGATCATGCTAATTTCTTATCTTTGTAATATTATTCATAAAGAAG1300.1042769596047101No Hit
AAACCAGGGGATGACCTGCAAACAGATCAAAGATATAGTCAGATATTAAAGT1300.1042769596047101No Hit
GCCAAAGGGAAGCAGCAGGTAGCTTACTTTGACTGGTTTGGAATCGCTTATC1290.10347482914621234No Hit
AGTTTAGGGCAAGTAAATGAAGGAAAACAGAATTCATTTTCATTATGGGAAA1290.10347482914621234No Hit
TCACTAGGGATACATACATAGGAAGGGAATGATAGCTGGCAAAGTCTCTCTG1260.10106843777071904No Hit
ATTAGCGGGGAGCAAACAAAAGAAAAACAAATAAAAAACAGTGAAGCACACC1260.10106843777071904No Hit
TACAAAGGGCTGTCCTTCTCATGTGGCATTTTTAGGATCTGGTAATGATGCT1250.10026630731222128No Hit
GTTGCGGAGGGAGCCACCACACCTGGCCTTTTTTATTAAAAAAAATTTTTTT1250.10026630731222128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)