FastQCFastQC Report
Sat 31 Dec 2022
SRR5847350.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847350.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123106
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGCCGTCT9720.7895634656312446No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGC7350.5970464477767128No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCCTGTCTCTTATAC1440.1169723652787029No Hit
GTCATAGGGATCCATTTGACCTAACATATACTTTAATTTGGATGTTTCATTA1340.10884928435657076No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)