FastQCFastQC Report
Sat 31 Dec 2022
SRR5847343.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847343.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26095
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGCCGTCT6462.4755700325732897No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGC4501.7244682889442424No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCCTGTCTCTTATAC1260.4828511209043878No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGT680.26058631921824105No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCCTGTCTCT650.24908986395861277No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAAACTCGTATGC640.24525771220540332No Hit
ACGCCGGGTCTGAAGGATCATCTATGTATTCAAGTAATTATTTTTTAGATAA530.20310404292009965No Hit
TCTCCAGGGATATGAAGCACTCTCTCAGACCACAGTGGAATAAAACTGGAAA510.19543973941368079No Hit
TGTGACGGGAAGCTACCGATTTATGGATATGTTTCCAGATGCCAGCCTTATT500.19160758766047134No Hit
GGCTCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA480.1839432841540525No Hit
CTTGCCGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAA480.1839432841540525No Hit
TGTATAGGGCAACAAAAGATACAAAGAAGGCAGGCATGATAGCACACACCTA450.17244682889442423No Hit
AAGCAGGGATTCCACTCACAGCAAAAGACAGGTCATCAAGACAGAAAGTCAA450.17244682889442423No Hit
GCTATTGGGGAAAGCAGGAAACATCTAAAATCGACACCGTAACATCACAATT450.17244682889442423No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGA440.16861467714121478No Hit
CGCGCTGGGAGGCCTGTTTTTAAGGAAGATAAGCCTTGAAGTGGTGTGGAGA440.16861467714121478No Hit
GAAAAAGGGCTGAGGTGCCAAGGCCATGGTGTCCGCCCTGCTGCGTCTGTTC430.16478252538800536No Hit
TTATTAGGGACAAAATGAATTGAAGACTCAAGCATTTGAGGCAGACAATTTA430.16478252538800536No Hit
TCGGCAAGGGCCGTCATTTATAGGCAGTGTTACTGTGGGAAGGCTTCTTTAT420.16095037363479595No Hit
AAGATAGGGGAATAGGAACCTGTTAGGGGAGCCCAAGAGCATAGTTGAAGAA420.16095037363479595No Hit
TTGCAGGGGTGTGGGGGGGCAAACGTGATGATTAACCTCCCTTCTTTGTTTC420.16095037363479595No Hit
GCCAATGGGGAAACCTTCGACAGTAGACTAGATAAGACAAAAGAAAGAATCT400.15328607012837708No Hit
TCTGCTGGGTAGAAGGAAAATATCTCCAGGTCCCATGGGAATGCACAGATAA400.15328607012837708No Hit
TGTGTGGGAAGAAGTATGCGCCTGTGGATGGGGGCCCTGTCACCGCAGCGTC400.15328607012837708No Hit
TGACAGGGGCTATGCTCTCTGTACTTTTGACCAAAAATTGACCAAAGTAAGA400.15328607012837708No Hit
TAAGTAGGGACTGGTACCTAAAAAAGGTACTAGGTTAAAAATGTAAGACAAT400.15328607012837708No Hit
CGAGCGGGGATGAGGGATGGAGGTCTTGGTGGACAAGTCAGGGGCTCTCCCA390.14945391837516767No Hit
GAAATCTGGGGCCTCAGCTTTTTAATTTAATTATTTTAATTCTTAATACTTT390.14945391837516767No Hit
TTTGTAGGGAAAGTACTGTGCTATGTGCTCATCGTCATTATCTGTCTGTTTT390.14945391837516767No Hit
GCTACTGGGACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCT390.14945391837516767No Hit
GTCGAAGGGGTATCCCTCATGCAGTTGGCATCCAGGCAGCCCTCTGCAGCAG390.14945391837516767No Hit
TTTGTTGGGATTCTTTACTTAATAATCATGAACACTTTTCTATCCAAAAAAA390.14945391837516767No Hit
GATCAAGGAAGTGTTCTGGGCGTAAGAACTCCGATTCATATTGCATTCTCTT380.14562176662195822No Hit
TATTGTGGGAAATTCTAAGGATAATAAATTTTTGACCTGTACAGAAGAAGAT370.1417896148687488No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGT370.1417896148687488No Hit
TCTCATGGGATCCTCCAAAATGATTTATTCACCTATTAGAGCTTCTGCTTCT370.1417896148687488No Hit
GAATGGGGGAGACTGTGGGAAAATATATAAGATAAACAACCCAATTTCTTCA370.1417896148687488No Hit
CTTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAGAGATGTTGACTT370.1417896148687488No Hit
GTAAATGGGAACAGCCTCGGCAGATAAGAGCCTTTCCTATTATCAAGTTTTC370.1417896148687488No Hit
TTCGCAGGGGCTTTCCGGACCTGGCCGAGCAGGAGGCGCCATCATGGGAGTG370.1417896148687488No Hit
GACACTGGGAACATTTTAGCAAATCGAATTCGACAATACATTAAAAACATTA360.13795746311553939No Hit
ACGCTGGGGGATGCACAAGAATCCCAAGGTCCAATTGTGGTCTACTTATCAA360.13795746311553939No Hit
ATACAAGGGCTTGCGCCGGGATGGCACATGTATACCTATGTATCAAACCTGT360.13795746311553939No Hit
GTTGCTGGGACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG360.13795746311553939No Hit
AAGAACGGCAAACAAGAGAAATCTTATTGGTTGTCCTTTTTAAAAAATGTCC360.13795746311553939No Hit
CTGTGGGGGATCCACCTTGAGGTGATTTTTGTATAAAGTGAGAGATGAGGAT350.13412531136232994No Hit
ACGAACCGGGAGTAGGAATCCGGAAGTATTAGATTGAATGGAAAAGCACTTG350.13412531136232994No Hit
ATTAGGGGGAACTGATACCACAAAAATACAAAAGATCATGTAAGGTTACTAT350.13412531136232994No Hit
ATATACGGGCAGTGGCTTCAGAGGAAGAGCAAGAAAGGCATGAAAGAAGTGA350.13412531136232994No Hit
GCTTAGGGGTCACAATAAAATGTTCTGCTTAAAGATTTCTGTGTATCTATTA350.13412531136232994No Hit
ATAACCGGGATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAA350.13412531136232994No Hit
TTTACAGGGGAACTAGATGCTACCAACACCAACACAGAACCCCTTTCCCCAT350.13412531136232994No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAAT350.13412531136232994No Hit
TTGGCCGGGAGAGAACGTTCGAGATCTCGTGGGTCGAAATCAAGGTGAATGA340.13029315960912052No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAA340.13029315960912052No Hit
AAACATGGGCAGTCCCCTTTTGTGTAGGATGATTGCCATCAGTGTTCTGGTT340.13029315960912052No Hit
CGTAGAGGGATATCAGGTTGAGACCAAGTATATGGTTTAAATTTCTAGGAGG330.1264610078559111No Hit
CACCATGGGAGACCAGAGGCACCGAAGGGAGGGAGGATGCGAGATGACCGGC330.1264610078559111No Hit
GTCTATGGGGCTAGACAAAATATTAACTTTCCAAATATGGTAAGAGGGCATG330.1264610078559111No Hit
AATATAGGGCTAACACAAAGCCTATTTTATAATAAAGTGTTGACTATGTCAT330.1264610078559111No Hit
CATTTAGGGGGCAGTCGCTGCAGCCGCCGCGGGAGGCGTCCGTGACAAGATG320.12262885610270166No Hit
CGTTACGGGAACGTATACAGGCAATAAATAGCATGATTAATGGAGTGGTACC320.12262885610270166No Hit
GTTTCAGGGACTTAACAGAAATGTTAAACTATAACAAGCACCATTTGAGGAT320.12262885610270166No Hit
ATGCGAGGGATTAGTATGGTCTTAATTGATTCAGGTAATTAGTGTCTCTCCC320.12262885610270166No Hit
TTATTTGGGAACTCAATCTTTTCAAAGAAAAATCCCTTAACAGTGTCGAAAC310.11879670434949223No Hit
TGAGCAGGGATGGGGGTTTCTAAATATATCAACAACATGAAGTCAATAGGTT310.11879670434949223No Hit
GTGCAAGGGAGTCATTGACAATCTGACACATCCATGATAAAGTTGCCTGACA310.11879670434949223No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGCC310.11879670434949223No Hit
GCAAAAGGGAACTGCACTGGATCCTTGAAAATGGAGCTTTGGCTTCAACTTG310.11879670434949223No Hit
TTCAGCGGGATTATATCAACAGAATGAAACATAAAAACCGTATAATCATCTC300.11496455259628281No Hit
AACCAGGAGTTTGATGCCAGCAACATAGCGAGACCCCCGTCTCTGTGGAAAG300.11496455259628281No Hit
AGTTATGGGCTTTGCACACATTTTAAAAATGTGATTATCTTCATTTTGCAGA300.11496455259628281No Hit
TAGTTGGGGACAGTTGGTGGAGAATAGACAAAGCCCACTCTTTAAGAAAAAT300.11496455259628281No Hit
GAAGGGGACCATCCTACCTGTGTGTGCACCTTATAACATAGCTGTAAGATAA300.11496455259628281No Hit
TTTAATGGGAGTGTAGTTGGGCAGTCTCGGCTCACTGCAACCTCCACCTCCT300.11496455259628281No Hit
TGAAATGGGGCGGCCGGGGCTGAAGGGAGAGGCGCAGGAGCCCTGGGGAGAG300.11496455259628281No Hit
GAACAGGGCGGAGTGACGGTGCCCAGGATAGATGTAATATTTCTTACAGATG290.11113240084307338No Hit
GACAACGGGAATAAGTCCTCAAAAGCAAACACAATAAAAACAAAAATAGATA290.11113240084307338No Hit
CAATAAGGGAAGAGGAATTATATTTTTTGATCTGGGCATTTAGTGCTACAAA290.11113240084307338No Hit
GGCGCAGGGATATCTATCTTTATTTTCTTTCAAATGCCCCATTGGAATAAAA290.11113240084307338No Hit
ATTTGAGGGAGTTTTCCAATGTTAGCCATTTTTAATCAACTCAGTTTTTAAA290.11113240084307338No Hit
TGTAAGGGGGGACACACAAGGAGACACCAGGGATGCGTGTGCACAGAGAGAG290.11113240084307338No Hit
ACTAGAGGGGATAATTTGTTGATATATTCATTAGTTGTCCACATTCCCTAAC280.10730024908986396No Hit
AGCTGTGGGTGCTACATAGAATGTAAAAGTGAGGCCAGGCTCAGTGGCTCAC280.10730024908986396No Hit
CGACCTGGGGAAGGACAGCAACTTTAAAGATTAAAGAAACATCATCTCACAC280.10730024908986396No Hit
CCAGACGGGATTCTCAAAAGTTTGGCTTTCAGTTCTCTCCTTGTCATCTCAT280.10730024908986396No Hit
CACTTAGGGAATCTTTAGTAATCTGTTTTTCTTAGAAATTTTGTTAAGTTGT280.10730024908986396No Hit
CAAATAGGGAGCTCCAGCCTCAAACAGCATCTGTACCGGTCCATCATCAACT280.10730024908986396No Hit
TCTAATGGGACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC280.10730024908986396No Hit
CTTGCTGGGATGGACCATTTGGTATAGGAGGAGTGAATAGTTGAATATTGGA280.10730024908986396No Hit
CAAGTAGGGGCCATCCACAGCTAATGAAGATATCCATAAAAGGATAGCACTG270.10346809733665455No Hit
GCACATGGGGCCTCGAGCCCCGCCCCTGGGAGACGCAGGCTCCTCCCCGCGG270.10346809733665455No Hit
AGTATGGGATATGCAAATACTATGCCATTTTATCTAAGGTATTTGGGTATCC270.10346809733665455No Hit
GGTACTGGGGGAAGGTGTTGGCTGTGAGTCTAATACCGGCTTGGAAAAAAAG270.10346809733665455No Hit
GTCCATGGGAGTGATAATGGCCACTTTCACACTACTAAATTTTCCTCTCTAC270.10346809733665455No Hit
CATATAGGGAATCTCTGTGTTAATGTTTCATTTGTCAAACTAAATCATCTCA270.10346809733665455No Hit
CATAAAGGGGAACTGAACAGCAGTTCCTGAGCTTACGAAGGGCTGGGAATTG270.10346809733665455No Hit
CGCTTTGGGTTGGGAGGCTGAGGCAGGAGAATCCTTGAACCTGGGAGGTGGA270.10346809733665455No Hit
GGGGCTGGAAAGTCAGCTTCAAATAAATACCCTACACAAAGGCTCTCCCTGG270.10346809733665455No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)