FastQCFastQC Report
Sat 31 Dec 2022
SRR5847341.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847341.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26164
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGCCGTCT5852.2358966518880905No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGC4521.7275645925699432No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCCTGTCTCTTATAC1040.3974927381134383No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAAACTCGTATGC740.2828313713499465No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGA720.27518728023238037No Hit
GCTATTGGGGAAAGCAGGAAACATCTAAAATCGACACCGTAACATCACAATT630.2407888702033328No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGT580.22167864240941754No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCCTGTCTCT570.21785659685063444No Hit
TGTGACGGGAAGCTACCGATTTATGGATATGTTTCCAGATGCCAGCCTTATT530.20256841461550223No Hit
ACGCCGGGTCTGAAGGATCATCTATGTATTCAAGTAATTATTTTTTAGATAA510.1949243234979361No Hit
GGCTCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA490.18728023238036998No Hit
TAAGTAGGGACTGGTACCTAAAAAAGGTACTAGGTTAAAAATGTAAGACAAT490.18728023238036998No Hit
TTATTTGGGAACTCAATCTTTTCAAAGAAAAATCCCTTAACAGTGTCGAAAC480.1834581868215869No Hit
TCTCCAGGGATATGAAGCACTCTCTCAGACCACAGTGGAATAAAACTGGAAA480.1834581868215869No Hit
GATCAAGGAAGTGTTCTGGGCGTAAGAACTCCGATTCATATTGCATTCTCTT470.17963614126280386No Hit
GACACTGGGAACATTTTAGCAAATCGAATTCGACAATACATTAAAAACATTA460.1758140957040208No Hit
AGTAAAGGGGATGCATTCACAGGACCAGGAATATACATGTTCAGAACAGTCC450.17199205014523772No Hit
TTATTAGGGACAAAATGAATTGAAGACTCAAGCATTTGAGGCAGACAATTTA440.16817000458645467No Hit
GTTCTTGGGAGTAGATTTTTGTGTCAAATTTCAATCTTTGAACTATAGGATT430.16434795902767163No Hit
TCTCATGGGATCCTCCAAAATGATTTATTCACCTATTAGAGCTTCTGCTTCT430.16434795902767163No Hit
ATACAAGGGCTTGCGCCGGGATGGCACATGTATACCTATGTATCAAACCTGT430.16434795902767163No Hit
TTCGTGGGGATTTCCCCTGGGTGCTAGCAGAAGAGGAAGCTAAAGACTCAAA420.16052591346888853No Hit
TGACAGGGGCTATGCTCTCTGTACTTTTGACCAAAAATTGACCAAAGTAAGA420.16052591346888853No Hit
TGTGTGGGAAGAAGTATGCGCCTGTGGATGGGGGCCCTGTCACCGCAGCGTC410.1567038679101055No Hit
AAACATGGGCAGTCCCCTTTTGTGTAGGATGATTGCCATCAGTGTTCTGGTT410.1567038679101055No Hit
ACGCTGGGGGATGCACAAGAATCCCAAGGTCCAATTGTGGTCTACTTATCAA400.15288182235132244No Hit
ATATACGGGCAGTGGCTTCAGAGGAAGAGCAAGAAAGGCATGAAAGAAGTGA400.15288182235132244No Hit
TGTATAGGGCAACAAAAGATACAAAGAAGGCAGGCATGATAGCACACACCTA390.14905977679253937No Hit
AGTTATGGGCTTTGCACACATTTTAAAAATGTGATTATCTTCATTTTGCAGA390.14905977679253937No Hit
GAATGGGGGAGACTGTGGGAAAATATATAAGATAAACAACCCAATTTCTTCA390.14905977679253937No Hit
TTTGTTGGGATTCTTTACTTAATAATCATGAACACTTTTCTATCCAAAAAAA390.14905977679253937No Hit
TATTGTGGGAAATTCTAAGGATAATAAATTTTTGACCTGTACAGAAGAAGAT380.1452377312337563No Hit
AACTAAGGGATCCTGATCCCCAAACCACGTGAGAGTTCAAACGTTGTGCACA380.1452377312337563No Hit
GAAATCTGGGGCCTCAGCTTTTTAATTTAATTATTTTAATTCTTAATACTTT380.1452377312337563No Hit
TCTGCTGGGTAGAAGGAAAATATCTCCAGGTCCCATGGGAATGCACAGATAA380.1452377312337563No Hit
TTGGCCGGGAGAGAACGTTCGAGATCTCGTGGGTCGAAATCAAGGTGAATGA380.1452377312337563No Hit
GTAAATGGGAACAGCCTCGGCAGATAAGAGCCTTTCCTATTATCAAGTTTTC380.1452377312337563No Hit
GCAAAAGGGAACTGCACTGGATCCTTGAAAATGGAGCTTTGGCTTCAACTTG380.1452377312337563No Hit
TGTAAGGGGGGACACACAAGGAGACACCAGGGATGCGTGTGCACAGAGAGAG380.1452377312337563No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGT370.14141568567497326No Hit
CGTAGAGGGATATCAGGTTGAGACCAAGTATATGGTTTAAATTTCTAGGAGG370.14141568567497326No Hit
GAAGGGGACCATCCTACCTGTGTGTGCACCTTATAACATAGCTGTAAGATAA370.14141568567497326No Hit
TAACTAGGGATCTTCTTCTGAATGTGTATGTATCAAACAACAAAGCTGAAAA360.13759364011619019No Hit
GTCTATGGGGCTAGACAAAATATTAACTTTCCAAATATGGTAAGAGGGCATG360.13759364011619019No Hit
TTTACAGGGGAACTAGATGCTACCAACACCAACACAGAACCCCTTTCCCCAT360.13759364011619019No Hit
TTGCAGGGGTGTGGGGGGGCAAACGTGATGATTAACCTCCCTTCTTTGTTTC360.13759364011619019No Hit
CCAGCGAGGGTGGCTCATTTATTGCCCCCTATAATTAATGGCAATGACACCA360.13759364011619019No Hit
TTTTAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC350.13377159455740711No Hit
ACACTGGGGTGCTGGAGCAGAACAATGGATTTCTCTTTCTCTTTCATGCAAG350.13377159455740711No Hit
TAGGAACGGGAGCAGAAAGCACTGACAATTTTTCTTTATGGCTGTAACAATT350.13377159455740711No Hit
CAACCAGGGGCATGTTAAAGATCTTAATGGCAACCAGCACCTCTTAAGTATG350.13377159455740711No Hit
AATCCTGGGGACGCTCTTCCGGATCTTTGGCTTGGGACTGAAATTCTTCCTA340.12994954899862407No Hit
GTTGCTGGGACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG340.12994954899862407No Hit
CATTTAGGGGGCAGTCGCTGCAGCCGCCGCGGGAGGCGTCCGTGACAAGATG330.126127503439841No Hit
AAGCAGGGATTCCACTCACAGCAAAAGACAGGTCATCAAGACAGAAAGTCAA330.126127503439841No Hit
GGTAACGGGAAGTTTTTTTCTCTTTGAAAGATAGAGATTAATACAACTACTT330.126127503439841No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAA330.126127503439841No Hit
CGAGCGGGGATGAGGGATGGAGGTCTTGGTGGACAAGTCAGGGGCTCTCCCA320.12230545788105794No Hit
CAAAGAGGGAAATATTTGAAAGGAAGAATAACACATTCTCATTAGTCACAAA320.12230545788105794No Hit
GCTCGAGGGCAAGAGCAGCTGGGAGAACGTCCGAGCTGCTGCACCCCTGTTC320.12230545788105794No Hit
CATAAAGGGGAACTGAACAGCAGTTCCTGAGCTTACGAAGGGCTGGGAATTG320.12230545788105794No Hit
GTGCAAGGGAGTCATTGACAATCTGACACATCCATGATAAAGTTGCCTGACA320.12230545788105794No Hit
TTTGTAGGGAAAGTACTGTGCTATGTGCTCATCGTCATTATCTGTCTGTTTT320.12230545788105794No Hit
TCTGCAGGGATTGTTGTTAACTGTAGTCACCACGTTGTACTGTGGATCTCTT310.11848341232227488No Hit
ACTAGAGGGGATAATTTGTTGATATATTCATTAGTTGTCCACATTCCCTAAC310.11848341232227488No Hit
GAACAGGGCGGAGTGACGGTGCCCAGGATAGATGTAATATTTCTTACAGATG310.11848341232227488No Hit
AGTATGGGATATGCAAATACTATGCCATTTTATCTAAGGTATTTGGGTATCC310.11848341232227488No Hit
TCGGCAAGGGCCGTCATTTATAGGCAGTGTTACTGTGGGAAGGCTTCTTTAT310.11848341232227488No Hit
CAAATAGGGAGCTCCAGCCTCAAACAGCATCTGTACCGGTCCATCATCAACT310.11848341232227488No Hit
AAGAACGGCAAACAAGAGAAATCTTATTGGTTGTCCTTTTTAAAAAATGTCC310.11848341232227488No Hit
TGTAAAGGGCAAGCTATTGCATGATTAGCCCCCTATCTGGCAAGGAAACCCC300.11466136676349181No Hit
ATTAGGGGGAACTGATACCACAAAAATACAAAAGATCATGTAAGGTTACTAT300.11466136676349181No Hit
CTTGCCGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAA300.11466136676349181No Hit
CAATAAGGGAAGAGGAATTATATTTTTTGATCTGGGCATTTAGTGCTACAAA300.11466136676349181No Hit
AAGTTAGGGCTGGTCTTTTGACACAGGTGGCTGACAATTGGTGATCTCTGCC300.11466136676349181No Hit
TAGTTGGGGACAGTTGGTGGAGAATAGACAAAGCCCACTCTTTAAGAAAAAT300.11466136676349181No Hit
GGCGCAGGGATATCTATCTTTATTTTCTTTCAAATGCCCCATTGGAATAAAA300.11466136676349181No Hit
CGCGCTGGGAGGCCTGTTTTTAAGGAAGATAAGCCTTGAAGTGGTGTGGAGA300.11466136676349181No Hit
ATTTGAGGGAGTTTTCCAATGTTAGCCATTTTTAATCAACTCAGTTTTTAAA300.11466136676349181No Hit
CACGCTGGGGACGCTCTTCCGATCTTAGTTGGGGATGCTCTTTGCCTCAGAG290.11083932120470877No Hit
AAAAGCGGGGTACCCAAGGATCAGTCTGCCTGATGCTCCCATATAGCAAAGC290.11083932120470877No Hit
AGAACAGGGGAATACACAGGAAAAGTTCTTGAAGAAAATTAAAAGTGCTGCT290.11083932120470877No Hit
ACACCTGGGAATGAAATGAGATGAAATAAAATAATGAAATGATGAAATAATG290.11083932120470877No Hit
CAAGTGGGGAGAACTGGATGATAGATTATGTGACGCCTGAAGTGGATCCAAG290.11083932120470877No Hit
ACAGCCTTCTATCAATTTGATTCATTTCAGTTAGTTTGGCAGAAGTGGGCTG290.11083932120470877No Hit
TGGTTCGGGATGATAGGCTTGGAGTACAGAAATGTTTCCTTAGCTGATATCT290.11083932120470877No Hit
TCTAATGGGACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC290.11083932120470877No Hit
GTCGAAGGGGTATCCCTCATGCAGTTGGCATCCAGGCAGCCCTCTGCAGCAG290.11083932120470877No Hit
AATTCTGGGATATACTTAATTCCTTAATAATCATGTTTCATTTTCTGTTCAA290.11083932120470877No Hit
CTACATGGGAATTCCTCAAGGATCTAGAACTAGAAATACCATTTGATCCAGT290.11083932120470877No Hit
GCTTTAGGGACTGCTTCCCAGGGTTTCCAGCTGAACAATGAATATATTGTGA280.10701727564592571No Hit
TTCAGCGGGATTATATCAACAGAATGAAACATAAAAACCGTATAATCATCTC280.10701727564592571No Hit
CAACCTGGGAGCTCGTTGACAAGAAAAACAGCCTGGTGGCTGAGGAGGCCGA280.10701727564592571No Hit
AACCAGGAGTTTGATGCCAGCAACATAGCGAGACCCCCGTCTCTGTGGAAAG280.10701727564592571No Hit
CCAGGTGGGAGAGGAAGGATCCAGGTTTGGGAGCTTTAAAAGTAGAATTGAG280.10701727564592571No Hit
CACCATGGGAGACCAGAGGCACCGAAGGGAGGGAGGATGCGAGATGACCGGC280.10701727564592571No Hit
CATATAGGGAATCTCTGTGTTAATGTTTCATTTGTCAAACTAAATCATCTCA280.10701727564592571No Hit
CTTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAGAGATGTTGACTT280.10701727564592571No Hit
GGGGCTGGGCATGAACTGCGTGTGGATTCATTGCCTGCATCGGATGACAAAG280.10701727564592571No Hit
GGCTGTGGGGGGCCTCAGTCCCATGTTGGGAGCAGGACAGGCTGACCAGGCT280.10701727564592571No Hit
GCCAATGGGGAAACCTTCGACAGTAGACTAGATAAGACAAAAGAAAGAATCT270.10319523008714264No Hit
CTGTGGGGGATCCACCTTGAGGTGATTTTTGTATAAAGTGAGAGATGAGGAT270.10319523008714264No Hit
CGTTACGGGAACGTATACAGGCAATAAATAGCATGATTAATGGAGTGGTACC270.10319523008714264No Hit
GGCAGTGGGGGTTTCCTTCTGATAAGGGATACAGTGGACCATGTCGCTTATA270.10319523008714264No Hit
ACCTAGGGAGAATGAGTTCCTTGAGGGCAGGGATTGTGCTTTGTCTGTCTCT270.10319523008714264No Hit
GTTTCAGGGACTTAACAGAAATGTTAAACTATAACAAGCACCATTTGAGGAT270.10319523008714264No Hit
CGACCTGGGGAAGGACAGCAACTTTAAAGATTAAAGAAACATCATCTCACAC270.10319523008714264No Hit
GCTAAGGGACGTTTCAGAAATTGACAAGTCTCAAAAGTCTTGAAGATTTTAT270.10319523008714264No Hit
GCTCCTGGGCTCGTTTGCATTATCGTGTCAGAAGCAGAAGGAAAACACTTCA270.10319523008714264No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)