FastQCFastQC Report
Sat 31 Dec 2022
SRR5847296.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847296.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences231844
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGTTGTGGATCTCGTATGC6880.2967512637808182No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTTGTGGATCTCGTATGCCGTCT5860.2527561636272666RNA PCR Primer, Index 23 (95% over 21bp)
AGTACTGGGAGCTGACATTTTACTTTGGGGACTAAAAATCTCCTTTTTTTTT2320.10006728662376425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)