FastQCFastQC Report
Sat 31 Dec 2022
SRR5847249.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847249.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences273388
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGC18430.6741334659897289No Hit
CTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGCCGTCT16870.6170717076096977No Hit
GACCCAGGTATAAAGCCCAGGACCTAATAGTTAATTTTCCTGATCCTCTATC2860.10461322369672407No Hit
AAGCATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA2740.1002238576674909No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)