FastQCFastQC Report
Sat 31 Dec 2022
SRR5847241.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847241.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences181825
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGCCGTCT14190.7804207342224667No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGC12400.6819744259590265No Hit
GATCACGGGCGATCTTTGCCTGGGACCCTGAAAATTCTCCAACTCAGGTTTT3060.168293688986663No Hit
AAGATAGGGATTCTATAGTGCATGGACAGATACATACAACAACATTTTGTTT2740.15069434896191392No Hit
AGATGGGGGGACCGCGGTTCCCAGAGGGCGTGAGGGGCTGGCGTGGACACAC2600.1429946377010862No Hit
TGCTCTGGGCAGATATCAGGATAAAGCTATTGTTTCTGAAGAATGACTGCCA2160.11879554516705623No Hit
TATGTAGGGATGGGGAAAGTGATGCCAGCAGTTCCTTTTCATTATTCTATCT1970.10834593702736146No Hit
AGCTTCGGGATGACCACTCTGAATTCATTTGGGGAATGAAAGATAAATCACA1950.10724597827581465No Hit
CACCATGGGCCTGAGCAAAACACCTTAAGGGAATAGAAGCTACAAATAATTT1820.10009624639076035No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)