FastQCFastQC Report
Sat 31 Dec 2022
SRR5847240.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847240.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182831
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGCCGTCT14220.7777674464396082No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGC12290.6722054793771297No Hit
GATCACGGGCGATCTTTGCCTGGGACCCTGAAAATTCTCCAACTCAGGTTTT2900.15861642719232513No Hit
AGATGGGGGGACCGCGGTTCCCAGAGGGCGTGAGGGGCTGGCGTGGACACAC2520.1378322056981584No Hit
AAGATAGGGATTCTATAGTGCATGGACAGATACATACAACAACATTTTGTTT2460.13455048651486892No Hit
TGCTCTGGGCAGATATCAGGATAAAGCTATTGTTTCTGAAGAATGACTGCCA2320.12689314175386013No Hit
TATGTAGGGATGGGGAAAGTGATGCCAGCAGTTCCTTTTCATTATTCTATCT2090.1143132182179171No Hit
CACCATGGGCCTGAGCAAAACACCTTAAGGGAATAGAAGCTACAAATAATTT1890.10337415427361882No Hit
ACAAGGGGACGAAATTGCCTAATGACTACTTTCTCAGAACATAACCCCTTGT1870.10228024787918898No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)