FastQCFastQC Report
Sat 31 Dec 2022
SRR5847238.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847238.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151468
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGC10540.6958565505585338No Hit
CTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGCCGTCT8980.5928644994322233No Hit
CACGCCGGCATGCCACAACTAGATACATCAACATGATTTATCACAATTATCT3680.24295560778514275No Hit
AATTTTGGGGAGAGCCCAGGGAGCTGGAGGTCGGCGCTTCCTCTCGTGCTTG2590.17099321308791296No Hit
TAACAGGGGAGGAACTCAAGTTTGGTTGCCAGAAAAATGTGCTTCATTCCCC2430.16042992579290674No Hit
TTTAAGGGGGCCCCGGGACGGCAGCCTGCGCGCCCGGCCGCCGCCTGCCCTC2410.15910951488103098No Hit
GCTGGGGTGAGAACAGGAATACGAAACACAACATCTGTAAATGACTAAATTC2370.15646869305727942No Hit
TTTTCAGGGTGCAGATTTGGTAGGAGGGGTAAATATGGCTTAGCCTAATAAG2310.1525074603216521No Hit
GTCAGGGGGATGCTCACCAGCCTTTCTCTCGGACCCGGTAGTGGTCCGTGAA2300.1518472548657142No Hit
GCTATAGGGGTAATGATTAATGTGTCAATCATCTAGTGTTATTGAAAGCAGC2240.1478860221300869No Hit
GTGCAGGGGAAGGAAGACTTGGGTATTTCCCAAAACAGGTAAAAATCTTAAA2220.1465656112182111No Hit
CAACTGGGGGCGGCTGGCAGGCACAGACCAGGGCTCCAAGGCCACCCCACCA2210.1459054057622732No Hit
GCAAGGGATGGTTCTATCACATAATATGGTTTGTTCAGCCATTGCCTAAATG2200.14524520030633534No Hit
AATCCGGGGAGGGATGGTTGTAAAGTAGATAGATCATTGGTTCAACCATTTT2200.14524520030633534No Hit
GATAACGGGATACATACTGACAAATGAATATTATCTGAAAGTTGTTTTGTTT2160.14260437848258378No Hit
GCCACTGGGTACGGGAATTCAGAAGAGAGGAAAAAATTGGCTGGGAATGGTT2140.14128396757070802No Hit
CACGAGGGCTGCTGAATTGGATGAAAGATAAAGCCCTTAAGGACAAGATTGA2110.13930335120289433No Hit
CGTTAAGGGAAGTTCAGGTTCAACCTGAGCAACATAGCAAGACCCCATCTGT2060.1360023239232049No Hit
GTTGTTGGGATTGGCATCCAGCTCCTCCTGCTCGTGGAGTTTGCACATAAGT2060.1360023239232049No Hit
TCGTCGGGGAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTAC2060.1360023239232049No Hit
ATTCACGGGATCTGCTCTGGGGGTGCTGCCCCTAGGCACAAGTATGACCCAT2060.1360023239232049No Hit
TTAGAAGGGCAGCTTTGGCTCTGGCTGCTTTTTAGAATAATGCAAGATAAAA2030.13402170755539125No Hit
ATGTGGGGGCGAAGCAAGGGCAGATTGAGAAGCAGAGTCTGAGGGACAGATG2000.1320410911875776No Hit
GCAACATGGGCAACCCCGAGGAGTCGGAGCTGGACCTGACCTACGGCAACAG1990.13138088573163967No Hit
GCAAGTGGGGGGAACTTGGCTCAGCTGCCGGGCTGCTCCGGTTGGAAACGCC1990.13138088573163967No Hit
AGCACCGGATTCTCTCACCAGTAGGACTTAAACTTTGTTTCTCCAGTGGCTT1970.1300604748197639No Hit
AACATAGGGATATTTGAAGGCAGTACACTCTGGCCAACTGTTACCAGTTGGT1970.1300604748197639No Hit
CGTTGTGGGACTATTACCTGCATCTGAAAAAAAATCTATAGACTCCAGCTGC1970.1300604748197639No Hit
ATGTGGGGTGGTAAATGCTAAAATGTAAGGTGTTTCTGAGAAGGAATATTTA1950.12874006390788814No Hit
TCCGTGGGGAAGTTCGAGGGCGGAGTGGTGATTGCCGCAGACATGCTGGGAT1940.12807985845195025No Hit
ATTTATGGGGAGTCTGGGTAATTTATAAAGAAAAAAGGTGTAAATGGCTCAT1930.12741965299601235No Hit
AAGGGGGGGTATTAATGAAATTCAGTTCATGCTATATTTTTCTGAGTTGTAT1930.12741965299601235No Hit
TACATGGGAACAGAGAGCATCTAGCCATGATGGAAAGGATCTTGGGTCCTAT1930.12741965299601235No Hit
TAAGCCGGGAGTCTCTCCTGTAGAGTCACAAGAGAAGCAAAAGAGGGTGGGT1920.12675944754007448No Hit
TTCATGGGGATTAAGTGTGATGCTGAGATTTGACTTTTCCCTCTTTGTATTA1920.12675944754007448No Hit
CTCTCACTGGGCGATCTAGCTTCGGGCACTGAAGGCAAATCTCCTTTGTCCA1910.1260992420841366No Hit
TATTGGGAGGATAAAGAACAGATCCTAAAAGCAGCAAGAGAAAAGAAACAAA1910.1260992420841366No Hit
GCTTGTGGGCAGCTGCTGGGCATGCTGTGTGCTTGCATCGTGTTGTGCAGAA1900.1254390366281987No Hit
GCGAACGGGAGACTTTGGTTGAGTCCTCAGTCTGACACTTAATCTAGTTTTG1900.1254390366281987No Hit
GTAGCAGGGAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACG1890.12477883117226081No Hit
CAAGCAGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA1870.12345842026038503No Hit
GGCGCAGGGGTGCTTTACGATTGTACATTTTTTACTGAAATAATTTTAGTTT1870.12345842026038503No Hit
TCATCAGGGCCTTTCACTCCTTTAACAAAAACCTTGCTTCCTTATCCCACCT1870.12345842026038503No Hit
TGTCCCAAGGCCAGGACACACACTTTAAAATCCAACATTCACCTAAGCAAGT1850.12213800934850925No Hit
TCCAAGGGGAGATTCTGGAGGCGAAGAACGCAAAGCTGAGAACATGGACGTT1850.12213800934850925No Hit
GGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAGAT1850.12213800934850925No Hit
TGCGTGGGGCAACAGGGCCGACTGCAGCTGGAAGATGGCGGCGTCCGTGGTC1840.12147780389257137No Hit
ATATAAGGGACTTGCAGGTTTATTTGATTCTAGAACCTATAACCTGTCTGAT1830.12081759843663349No Hit
ACGATAGGGGTAATGAAAGTCTCGGAAGGAGAAGAAGGAAAGAGAAAAGGGA1830.12081759843663349No Hit
GTCAGCGGGCAGCAGGAAGGATCACTCGGTGAACAAGATGTGTGCCTCCTCC1830.12081759843663349No Hit
GTGAAGGGGCGGCCTGGAGTCGAGGAAGAGAAAAATAAGGCTCCTGGTGTCC1810.11949718752475771No Hit
TCGGCAAGGGAGCCCAGATGCTCTTAATTAGGAAAATGGCTAAATAAATTAT1810.11949718752475771No Hit
TAGCCGTGGGAAATGACATAGTTCAACTTATTCCCTTGACAGTTTGTTTTGG1800.11883698206881983No Hit
CAAAACGGGATGGTCTCCCAGTTTCTAGATGAATGCAACATGATGATGGTGA1800.11883698206881983No Hit
TCACATGGGAAGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCC1800.11883698206881983No Hit
GTTTATGGGGCACGCAGCTGACTTTGTCTTCTCCGCACGACTGTTACAGAGG1800.11883698206881983No Hit
TTAAGCGGGAGAGCCTGAGGGAAGTGGGCAATGCCATCCTCTTCTGCCTCCT1800.11883698206881983No Hit
GCATTTGATTTTTTATTATTTTATGTTCCCCCGTTAGATTGTTTTAAGTGTT1800.11883698206881983No Hit
TGACCTGGGGTCGTTACTGTTTCCTTATCAAAGAAGGGGCAAGCTCTTTTGC1790.11817677661288192No Hit
TTAATTGGGCGCTGCCTTCTCCTGGGCCCACAATGACAGGACTTATTTCTTT1790.11817677661288192No Hit
GCTGTGGGATGAAATACAGATGATGATGATGATGATGAAGATGATGCTAAGT1790.11817677661288192No Hit
TTTTAGGGTAGCCAAGGCAATCAGGCAAGAGAAAGCAATAAAGCGTATTCAA1790.11817677661288192No Hit
ACATTAGGGTGTTCAGTATGTTTATGTCATTCTAAATGCAGCAAATTCAATG1790.11817677661288192No Hit
GCCTGAGGGGATTTATGGCTAAATTTGGAAATTTCTAGCGTCACAAGGAATG1780.11751657115694404No Hit
CCGCGTGGGGAACTATGTGTTAATTCATTTGTATCTTTTAAAAAATTATCAC1770.11685636570100615No Hit
TGACCCGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCC1770.11685636570100615No Hit
GTATTGGGGACTCGTCTGAATATTGCTTTTAGCCGTGTTTTATAACATAGAC1760.11619616024506826No Hit
AGACTTGGGGAGGGTTTTGAATGGTGATTTGTTCCCAGTTGGTAGTGTGCCT1760.11619616024506826No Hit
TTTCACGGGCTCCCTGATGGGTTTCCGAACTGGCTGACTTAACCAAAAAGCC1760.11619616024506826No Hit
TATTGAGGGGATATGGTTGCAATTATTCTGTATCCAGTTGTTTAATCTGGAT1760.11619616024506826No Hit
ATGGCTGGGAGGAAGTTTGTCGCTGATGGCATCTTCAAAGCTGAACTGAATG1760.11619616024506826No Hit
TGATATGGGGAAGAGAACTTGTGCTGTGAGGAACTTTCTTCCAAGATAATGT1760.11619616024506826No Hit
GACTGCCGGGCAGCAAAAATTGCTATTCCTTTGCCTCATTTAATTTTTAAAA1760.11619616024506826No Hit
CGACTTGGGCTTTGCCGTCGGCGAGTACAACAAAGCCAGCAACGACATGTAC1760.11619616024506826No Hit
ATTGGGGAAGGGGGAAGGGGTTCTGAGAGCAAAATCAGAATCAGCCTACCAC1750.11553595478913038No Hit
CACTGAGGGGGAGTCCCTGGGTTGCTTCCTGGGGTCTGTGGTGCTGGGTGTG1740.11487574933319249No Hit
GCCGAGGGACCTGTGGGCTCTTGTAATGTGTGGTAATATTTGGAGCTTTATA1740.11487574933319249No Hit
ACGACTGGGTGCCTTTCTAGATTTCTTTATCTTTCTGACCAGCAACTTAGGG1740.11487574933319249No Hit
AACAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1740.11487574933319249No Hit
GCAGTGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1740.11487574933319249No Hit
GTACAGGGGATTGTGTAAGAATCACTGCACTTAGCTGTTGGAATGTTGTTAA1740.11487574933319249No Hit
GCAAGGGTGGGAGTTTTTAGTTTTTTGTTTTTTTACTTATGAAATAAGTTTT1720.11355533842131672No Hit
TCTGGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCT1720.11355533842131672No Hit
TTTGCAGGGAAATATGGGATGAACACCTCTTGGCGTGGGCAACTACTGGAAG1720.11355533842131672No Hit
ACAAGAGGGGCCATTTTTCATTTGTTCTTTATTTTGTTGGGCTAGAAATCCA1720.11355533842131672No Hit
GATGAGGGGAGTCCTCAGCGGGGCGCGTGGCGAGCGGACTCGACTCGGCACC1720.11355533842131672No Hit
CTTAAAGGGAGAATAACTTTAAAATAGTTTGAAATTCTATATAGTTTAGACA1720.11355533842131672No Hit
GGCTAGGGCGGTATGTTCAAACTCAGACACGAAAACCAGAACTGCATCAGGA1710.11289513296537881No Hit
ACGTATGGGGGAAAAAACAATCCTAAAATTCACGTGGAACCACAGAAAGCAC1710.11289513296537881No Hit
ACAAAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCC1700.11223492750944095No Hit
AAACGCGGGATCGCGCCCGGGAGGCGCCGGAGCCCAGCGGCTGGCGCCAGAT1700.11223492750944095No Hit
TTAGATGGGGAAAAAGGCAAAGAGGCGGACAGTGCAGGGCTCCTCCCTCCTA1700.11223492750944095No Hit
TTGTATGGGAGTGGATGTGATCTTGGAACTTCCATGATTATCCACTTAAAGA1690.11157472205350306No Hit
GAACTTGGGGAGATAATGGAAGAGCCCTGCTACATAACTCCCTACAGAGAAA1690.11157472205350306No Hit
CGGCCAGGCCCACTTCTAGCCAGGCCTGTGCCTTCCTAGTCACTCTAACTCC1690.11157472205350306No Hit
TAATGTGGGCTGGGGTCAGATACACCTGGGTTTAAGTTCTAATTCTTCTGCC1670.11025431114162727No Hit
TAATACGGGATGCTGGAAACACCGGAATACAGAAGCAGATTTACAAATGAAG1670.11025431114162727No Hit
GGCCGCGGGGGGAAAGAGGCTATGTGAAAGGAAAATGAATTTCTAGAGCAGC1670.11025431114162727No Hit
GGCTAGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1670.11025431114162727No Hit
GTAGCAGGGGTATTCCAGTCTTCTAATTTACTAGTCTAGTAAGCTTGTTCAA1670.11025431114162727No Hit
GCTAATGGGCTGCATGGCTGGCTGCTGTCTGAAGCTATTTGGAGTCCTCTCC1670.11025431114162727No Hit
TTTTGCGGGGGGTGCCGGCAGGCGCCAGTCGCAGGTGTGCTGCTGAGGCGTG1660.10959410568568938No Hit
GTTAAAGGCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCTTGGC1660.10959410568568938No Hit
GGTTCTGGGAAGATTATTCAGCTCTTGTGCTGGTCTGTTCATGATATACTTT1660.10959410568568938No Hit
GATTGAGGGATTAGAGAGTGGGGTGCATGACAAGACCATAATCTAAAGCCAG1640.10827369477381361No Hit
AAACCCAGAGAAGTGATTACCCAATAGACTTCTGACTTAGGAGTAAATGTGA1640.10827369477381361No Hit
TGACTCGGGGAGTGGGAAATTGAAGGCCTCCTATAAACGGGATTGTTTTAGT1630.10761348931787572No Hit
CCAACTGGGGATCTTCTATTGGGTCTTTCTGAGGTTCAGAGAGGGTAAGTAA1630.10761348931787572No Hit
CTTTAGGGGCAACCTTGCAAGGGAAAGAATTCAGAGTAAATAAACAGTCTTT1630.10761348931787572No Hit
GATCTTGGGGAACTGCAGCAATCTTTGAAAGACTTCCAAAGAATGTTAGAGC1620.10695328386193784No Hit
TAATCTGGGTTTACTGATAAACTATAAAAGACTTTTTGAAGGATGCTGAAAA1620.10695328386193784No Hit
GCTAAAGGGCTCCGACATTATGGACATTTCTGGGGATACTGCTTTTTGGATT1620.10695328386193784No Hit
TCTGGTGGTACCTTAAAGAGATAAAATGCAGACATTCCTTGCTGAGTTTATA1620.10695328386193784No Hit
TCTCTTGGGAAAGCATGCAGTTCCTTGCATTGCTACAGATTCAATGCAATTC1620.10695328386193784No Hit
CCAAAAGGGAGATGTCTTATGTCTCCAGAAAATTCAGATCCACAATTCCACT1610.10629307840599996No Hit
TTCGTAGGGACTTCTTTCTTATTTACTAAGAATTTGCCTGTTTGAATAAGAA1610.10629307840599996No Hit
TCTTTGGGGGGAAAAATACTCTTTTCATAATATGAAATGCATAAAGCAGTTC1610.10629307840599996No Hit
GTCTATGGGGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCA1600.10563287295006206No Hit
TTACGGGCTGAGTGAGCACTTTTCACTTTCCAGCTAGGTCTGTTTTTCAGCT1600.10563287295006206No Hit
CTGAATCAGGGATTCACTCCAGATTCCAAAGCTCCAACTTGCCCAAGGCTGG1590.10497266749412418No Hit
GCTTCAGGGAACCAACTCATATCCTGATTGGTATTACAATTCTTGTAAATAA1590.10497266749412418No Hit
CGGCTTGGGAGTCTTAGGGGGTGGCCTGGCTGTTCCCTTCAACGGCAACGCT1580.1043124620381863No Hit
GCCTAAAAGATGGATAAGAAAGATGTATTTATCACCAACACATTCTTCAGCT1580.1043124620381863No Hit
TCCAGTGGGGGTGAACTTGTTCACAACTGGAACCGTACAAATTGATATCTTA1580.1043124620381863No Hit
GTGTCCGGGCCGTAATCGCCTGTTTCAAGAAAACTCTGTTCTCAGTTCACTC1580.1043124620381863No Hit
TGCAGTGGGTGATGCTGAAGGCAATTCAAAGAAAAGAAAAAGAGAAACTGAG1580.1043124620381863No Hit
TTCTAGGGGTTCAACTAAATTCATGCATTGAATGGACTTTATGGATAAAATA1580.1043124620381863No Hit
CAAGCTGGGCCTAAAACGCAAGCTCTCCGGACCAGACGGACACAGGGAGAAG1570.10365225658224839No Hit
TGACAAGGGGAGACAGCTGAAAGTATCCATGCTGACTTTCATGATTTAGAAG1570.10365225658224839No Hit
GTATTAGGGGTTGGCAAGGCCCGAGGCTTCTTCAAGAAGGGAGATGTGGTCA1570.10365225658224839No Hit
TAGTGCGGGTAGCGCGGGGATAGCTATTTTGGGAATTTCGATCTTAAAAAGT1560.10299205112631052No Hit
CAAGATGGGGTTTGGAAGAACCATCCCTAACCAGAAATGAACTAATCTAAGG1560.10299205112631052No Hit
TTAAGCGGGATCCTAAACATCTTAGCTCTGGGAGCCAAGGGGACTAGGCATA1560.10299205112631052No Hit
GGTAATGGGTATACTTTAAGTCAAAAACTTTCACAAGGACAAAGAAGCTAAT1560.10299205112631052No Hit
AAATTAGGGAAGGGCAGGAAGATGTGACTCAGCCATGACACGTGGTTCTGGT1560.10299205112631052No Hit
GTATAAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1560.10299205112631052No Hit
AGAATTGGGAGAAGAATTTCAAGTAGTTTTTAGACAAAACATATCCATGAGT1560.10299205112631052No Hit
CACAGAGGGTACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCT1550.10233184567037261No Hit
TTCACAGGGAGTATTTTGAAATGAAAAATGATGGGAACTCTTTGATATCTAC1550.10233184567037261No Hit
CGAACTGGGGACTTGCTGCATAATACACAAGCTGGTCATTGCCTGCAAGAAA1550.10233184567037261No Hit
GAATGTGGGCAAAAACAAGACAAAACTAAAAAAATACAACTGAGAAGGGTGA1550.10233184567037261No Hit
TAGCTGGGGAGGGGACCTGTTTTCTTCAAGGGAAGAAACACTCTTATTCCCA1550.10233184567037261No Hit
CAGATTGGGGGGCCAGTGAATAACACTCACTGCTGGCATTTAATGTGCAGTA1550.10233184567037261No Hit
GCACATGGGGAAAGTGTTAGAATTACAGGTGTAAGCCACTGCACCTTGCCTA1550.10233184567037261No Hit
AACAAAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1540.10167164021443473No Hit
ATGTCGGGGGACCACTGAAGTCCTGTATAAAGGGTTTACTCATCTCCAGTCA1540.10167164021443473No Hit
CCTTGAGGGATGGCACACGTTTACCTATGTAACAAACCTGCACCTTCTGTAT1540.10167164021443473No Hit
GAACGGGGATCAAAACAAAATGGAGGAAAACTAAGCATTGGCCTCATGTTCA1540.10167164021443473No Hit
CATACGGGGACATCAAAACATCAGAGGTTGTCAGACTGCCCTATCCTCTCCA1540.10167164021443473No Hit
GTTTCGGGGGTATTATAATTTTGTAACTGTTATGTAATAACTGCAACTGTGA1540.10167164021443473No Hit
CGCTACGGGGAAAGAAAGACTGAATGGATGCACGGTGAATGCATGAATGATT1540.10167164021443473No Hit
AATCTTGGGAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCT1530.10101143475849685No Hit
CATGTTGGGGAACTGGAGTCATTTTCTGAAAGGAAAGAAGAGGAGAAGGAAG1530.10101143475849685No Hit
TATCCGGGGGGCTGCCTTTGCTATTGAGAATATAAAATAAAAGTCAGAGGCA1530.10101143475849685No Hit
CTCATAGGGATTGTCCATTGTACCACCTCTTCCCAACACTTTTCTCCACCTG1530.10101143475849685No Hit
AGACTAGGGGAAATACTTTAAAAAACGTGTATAAACTATTCTCATTAGCATG1530.10101143475849685No Hit
TACTCTGGAGAAATTAAGAATCATTAAAATTGTTAAGCTATTTTATTGTTAT1530.10101143475849685No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)