FastQCFastQC Report
Sat 31 Dec 2022
SRR5847236.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847236.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149097
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGC10330.6928375487099002No Hit
CTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGCCGTCT9140.6130237362254103No Hit
CACGCCGGCATGCCACAACTAGATACATCAACATGATTTATCACAATTATCT3830.256879749424871No Hit
GCCACTGGGTACGGGAATTCAGAAGAGAGGAAAAAATTGGCTGGGAATGGTT2810.18846791015245107No Hit
TAACAGGGGAGGAACTCAAGTTTGGTTGCCAGAAAAATGTGCTTCATTCCCC2280.15292058190305638No Hit
TCCGTGGGGAAGTTCGAGGGCGGAGTGGTGATTGCCGCAGACATGCTGGGAT2270.15224987759646402No Hit
TTTTCAGGGTGCAGATTTGGTAGGAGGGGTAAATATGGCTTAGCCTAATAAG2260.1515791732898717No Hit
TCGTCGGGGAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTAC2240.15023776467668698No Hit
CAACTGGGGGCGGCTGGCAGGCACAGACCAGGGCTCCAAGGCCACCCCACCA2240.15023776467668698No Hit
TGACAAGGGGAGACAGCTGAAAGTATCCATGCTGACTTTCATGATTTAGAAG2170.14554283453054054No Hit
CGTTAAGGGAAGTTCAGGTTCAACCTGAGCAACATAGCAAGACCCCATCTGT2110.1415186086909864No Hit
GTCAGGGGGATGCTCACCAGCCTTTCTCTCGGACCCGGTAGTGGTCCGTGAA2100.14084790438439404No Hit
ACGACTGGGTGCCTTTCTAGATTTCTTTATCTTTCTGACCAGCAACTTAGGG2090.14017720007780168No Hit
TTAATTGGGCGCTGCCTTCTCCTGGGCCCACAATGACAGGACTTATTTCTTT2070.138835791464617No Hit
TTTAAGGGGGCCCCGGGACGGCAGCCTGCGCGCCCGGCCGCCGCCTGCCCTC2070.138835791464617No Hit
GCAACATGGGCAACCCCGAGGAGTCGGAGCTGGACCTGACCTACGGCAACAG2070.138835791464617No Hit
GCTTGTGGGCAGCTGCTGGGCATGCTGTGTGCTTGCATCGTGTTGTGCAGAA2060.13816508715802464No Hit
GCCTGAGGGGATTTATGGCTAAATTTGGAAATTTCTAGCGTCACAAGGAATG2030.13615297423824757No Hit
GCAAGGGATGGTTCTATCACATAATATGGTTTGTTCAGCCATTGCCTAAATG2000.13414086131847053No Hit
CCGCGTGGGGAACTATGTGTTAATTCATTTGTATCTTTTAAAAAATTATCAC2000.13414086131847053No Hit
ATATAAGGGACTTGCAGGTTTATTTGATTCTAGAACCTATAACCTGTCTGAT1980.13279945270528581No Hit
GTGCAGGGGAAGGAAGACTTGGGTATTTCCCAAAACAGGTAAAAATCTTAAA1980.13279945270528581No Hit
TGCGTGGGGCAACAGGGCCGACTGCAGCTGGAAGATGGCGGCGTCCGTGGTC1980.13279945270528581No Hit
CACGAGGGCTGCTGAATTGGATGAAAGATAAAGCCCTTAAGGACAAGATTGA1980.13279945270528581No Hit
GCTGGTGGGGGCTCTCACTGCTAGGGGCTTAAGCGGAGGGAGTCGAGCCAGC1960.13145804409210113No Hit
AGCACCGGATTCTCTCACCAGTAGGACTTAAACTTTGTTTCTCCAGTGGCTT1960.13145804409210113No Hit
TTAGAAGGGCAGCTTTGGCTCTGGCTGCTTTTTAGAATAATGCAAGATAAAA1930.12944593117232406No Hit
GTTAAAGGCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCTTGGC1890.12676311394595466No Hit
GTATTGGGGACTCGTCTGAATATTGCTTTTAGCCGTGTTTTATAACATAGAC1880.1260924096393623No Hit
GTAGCAGGGAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACG1880.1260924096393623No Hit
TTCATGGGGATTAAGTGTGATGCTGAGATTTGACTTTTCCCTCTTTGTATTA1870.12542170533276994No Hit
TACTCTGGAGAAATTAAGAATCATTAAAATTGTTAAGCTATTTTATTGTTAT1870.12542170533276994No Hit
ATTCACGGGATCTGCTCTGGGGGTGCTGCCCCTAGGCACAAGTATGACCCAT1860.12475100102617759No Hit
GTGAAGGGGCGGCCTGGAGTCGAGGAAGAGAAAAATAAGGCTCCTGGTGTCC1840.12340959241299287No Hit
GTAGCAGGGGTATTCCAGTCTTCTAATTTACTAGTCTAGTAAGCTTGTTCAA1840.12340959241299287No Hit
GACTGCCGGGCAGCAAAAATTGCTATTCCTTTGCCTCATTTAATTTTTAAAA1840.12340959241299287No Hit
AATTTTGGGGAGAGCCCAGGGAGCTGGAGGTCGGCGCTTCCTCTCGTGCTTG1830.12273888810640052No Hit
GCTAAAGGGCTCCGACATTATGGACATTTCTGGGGATACTGCTTTTTGGATT1830.12273888810640052No Hit
CAAGCAGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA1820.12206818379980819No Hit
GCTATAGGGGTAATGATTAATGTGTCAATCATCTAGTGTTATTGAAAGCAGC1820.12206818379980819No Hit
ACGATAGGGGTAATGAAAGTCTCGGAAGGAGAAGAAGGAAAGAGAAAAGGGA1820.12206818379980819No Hit
TGACCTGGGGTCGTTACTGTTTCCTTATCAAAGAAGGGGCAAGCTCTTTTGC1810.12139747949321583No Hit
ATGTGGGGGCGAAGCAAGGGCAGATTGAGAAGCAGAGTCTGAGGGACAGATG1810.12139747949321583No Hit
AACATAGGGATATTTGAAGGCAGTACACTCTGGCCAACTGTTACCAGTTGGT1810.12139747949321583No Hit
GTCAGCGGGCAGCAGGAAGGATCACTCGGTGAACAAGATGTGTGCCTCCTCC1810.12139747949321583No Hit
ATGTGGGGTGGTAAATGCTAAAATGTAAGGTGTTTCTGAGAAGGAATATTTA1790.12005607088003112No Hit
CGGCCAGGCCCACTTCTAGCCAGGCCTGTGCCTTCCTAGTCACTCTAACTCC1790.12005607088003112No Hit
GCCGAGGGACCTGTGGGCTCTTGTAATGTGTGGTAATATTTGGAGCTTTATA1780.11938536657343876No Hit
ATTTATGGGGAGTCTGGGTAATTTATAAAGAAAAAAGGTGTAAATGGCTCAT1780.11938536657343876No Hit
CCTTGAGGGATGGCACACGTTTACCTATGTAACAAACCTGCACCTTCTGTAT1770.11871466226684642No Hit
CTCCTGGGGTGGTGATTACCGGCATTTTATTAAACTTAAAACTTTGTAGAAA1760.11804395796025406No Hit
TCATCAGGGCCTTTCACTCCTTTAACAAAAACCTTGCTTCCTTATCCCACCT1760.11804395796025406No Hit
GCGAACGGGAGACTTTGGTTGAGTCCTCAGTCTGACACTTAATCTAGTTTTG1760.11804395796025406No Hit
GTTGTTGGGATTGGCATCCAGCTCCTCCTGCTCGTGGAGTTTGCACATAAGT1740.11670254934706935No Hit
TGATATGGGGAAGAGAACTTGTGCTGTGAGGAACTTTCTTCCAAGATAATGT1740.11670254934706935No Hit
CGTTGTGGGACTATTACCTGCATCTGAAAAAAAATCTATAGACTCCAGCTGC1740.11670254934706935No Hit
ATCGCCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1730.11603184504047702No Hit
TAGCCGTGGGAAATGACATAGTTCAACTTATTCCCTTGACAGTTTGTTTTGG1730.11603184504047702No Hit
TCCAAGGGGAGATTCTGGAGGCGAAGAACGCAAAGCTGAGAACATGGACGTT1720.11536114073388466No Hit
TCACATGGGAAGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCC1720.11536114073388466No Hit
CTGAATCAGGGATTCACTCCAGATTCCAAAGCTCCAACTTGCCCAAGGCTGG1720.11536114073388466No Hit
GCAAGGGTGGGAGTTTTTAGTTTTTTGTTTTTTTACTTATGAAATAAGTTTT1710.1146904364272923No Hit
CGGCTTGGGAGTCTTAGGGGGTGGCCTGGCTGTTCCCTTCAACGGCAACGCT1710.1146904364272923No Hit
TATTGAGGGGATATGGTTGCAATTATTCTGTATCCAGTTGTTTAATCTGGAT1710.1146904364272923No Hit
GGCGCAGGGGTGCTTTACGATTGTACATTTTTTACTGAAATAATTTTAGTTT1710.1146904364272923No Hit
TTAAGCGGGATCCTAAACATCTTAGCTCTGGGAGCCAAGGGGACTAGGCATA1700.11401973212069995No Hit
ACAAAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCC1700.11401973212069995No Hit
ACAAGAGGGGCCATTTTTCATTTGTTCTTTATTTTGTTGGGCTAGAAATCCA1700.11401973212069995No Hit
TATCCGGGGGGCTGCCTTTGCTATTGAGAATATAAAATAAAAGTCAGAGGCA1700.11401973212069995No Hit
AAGCTTGGGATAGCATCAAAAGATAAAATACTTATGAGTAAATTTAACGAAA1700.11401973212069995No Hit
AAACCCAGAGAAGTGATTACCCAATAGACTTCTGACTTAGGAGTAAATGTGA1690.11334902781410759No Hit
TTAGATGGGGAAAAAGGCAAAGAGGCGGACAGTGCAGGGCTCCTCCCTCCTA1690.11334902781410759No Hit
AATCCGGGGAGGGATGGTTGTAAAGTAGATAGATCATTGGTTCAACCATTTT1690.11334902781410759No Hit
GCGCACGGGATGGGCGTGCCCTGCAAGCCTCTGCACTCAATGCCTGGCGAGG1690.11334902781410759No Hit
TAATGTGGGCTGGGGTCAGATACACCTGGGTTTAAGTTCTAATTCTTCTGCC1680.11267832350751524No Hit
CAAAACGGGATGGTCTCCCAGTTTCTAGATGAATGCAACATGATGATGGTGA1680.11267832350751524No Hit
GATTGAGGGATTAGAGAGTGGGGTGCATGACAAGACCATAATCTAAAGCCAG1670.11200761920092288No Hit
GACCAGGGGATTCATTTTCCTACCTATATTACACAAAAAAGTATAGAAAAGA1670.11200761920092288No Hit
TGACTCGGGGAGTGGGAAATTGAAGGCCTCCTATAAACGGGATTGTTTTAGT1670.11200761920092288No Hit
CCAACTGGGGATCTTCTATTGGGTCTTTCTGAGGTTCAGAGAGGGTAAGTAA1670.11200761920092288No Hit
CACTGAGGGGGAGTCCCTGGGTTGCTTCCTGGGGTCTGTGGTGCTGGGTGTG1660.11133691489433054No Hit
GGCTAGGGCGGTATGTTCAAACTCAGACACGAAAACCAGAACTGCATCAGGA1660.11133691489433054No Hit
GGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAGAT1660.11133691489433054No Hit
AGTGAAGGGCTCACATTTATGTTCATTCTCCGGGCTTATATTCATTCTCTGC1650.11066621058773818No Hit
TAAGCCGGGAGTCTCTCCTGTAGAGTCACAAGAGAAGCAAAAGAGGGTGGGT1650.11066621058773818No Hit
GGTTCTGGGAAGATTATTCAGCTCTTGTGCTGGTCTGTTCATGATATACTTT1650.11066621058773818No Hit
GCTGGGGTGAGAACAGGAATACGAAACACAACATCTGTAAATGACTAAATTC1640.10999550628114584No Hit
ATGGCTGGGCAAGGTGAGCTGTTGAAAGAACTGGTACCATTTCTCAGTGTGA1640.10999550628114584No Hit
CTTTAGGGGCAACCTTGCAAGGGAAAGAATTCAGAGTAAATAAACAGTCTTT1640.10999550628114584No Hit
ATGCACGGGATCACTATAAAGTGTTAAAATGATTTTTATTTTTTTTAAAGCT1640.10999550628114584No Hit
GCTGTGGGATGAAATACAGATGATGATGATGATGATGAAGATGATGCTAAGT1630.10932480197455349No Hit
ATCGCCGGGCAAAAATGGACTGGAAGGCAACTACCTCAAATTCATAATGGTC1630.10932480197455349No Hit
ATGGCTGGGAGGAAGTTTGTCGCTGATGGCATCTTCAAAGCTGAACTGAATG1630.10932480197455349No Hit
TTTCACGGGCTCCCTGATGGGTTTCCGAACTGGCTGACTTAACCAAAAAGCC1620.10865409766796114No Hit
AAACGCGGGATCGCGCCCGGGAGGCGCCGGAGCCCAGCGGCTGGCGCCAGAT1620.10865409766796114No Hit
CTCATAGGGATTGTCCATTGTACCACCTCTTCCCAACACTTTTCTCCACCTG1620.10865409766796114No Hit
GCAAGTGGGGGGAACTTGGCTCAGCTGCCGGGCTGCTCCGGTTGGAAACGCC1620.10865409766796114No Hit
TCTTCTGGGAATATGGATCTATGATAGGTCCATAAATAATATTGTTCAGGAG1620.10865409766796114No Hit
CGACTTGGGCTTTGCCGTCGGCGAGTACAACAAAGCCAGCAACGACATGTAC1620.10865409766796114No Hit
TTGAGCACGGGAAATTGAAATTCTGGCTGTGGATCTACCCAAAGAAACAATA1620.10865409766796114No Hit
TAGCTGGGGAGGGGACCTGTTTTCTTCAAGGGAAGAAACACTCTTATTCCCA1610.10798339336136878No Hit
ACATTAGGGTGTTCAGTATGTTTATGTCATTCTAAATGCAGCAAATTCAATG1610.10798339336136878No Hit
GCATTAGGGATATGTAAATGATGCTGTTACCAAAAACATTAAGGTAGTTCTT1600.10731268905477642No Hit
ATAATAGGGCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAGCTGCT1600.10731268905477642No Hit
AACAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1600.10731268905477642No Hit
TACATGGGAACAGAGAGCATCTAGCCATGATGGAAAGGATCTTGGGTCCTAT1600.10731268905477642No Hit
TTCGTAGGGACTTCTTTCTTATTTACTAAGAATTTGCCTGTTTGAATAAGAA1600.10731268905477642No Hit
TAGCCACGGGAGAGGTCATTATTATTAGCGATAATAGTAATAAAAGCGAACA1590.10664198474818407No Hit
AGCCGGGATATCCTTAGTTTGCTCAAAAGAGTCCTGGTTATTCCTGTTTTCT1590.10664198474818407No Hit
GCGCAAGGGACCAAAAAAAATCCCAAGAATTTATTTGGGAATTATTAAAAAG1590.10664198474818407No Hit
GAACGGGGATCAAAACAAAATGGAGGAAAACTAAGCATTGGCCTCATGTTCA1580.10597128044159171No Hit
GATAACGGGATACATACTGACAAATGAATATTATCTGAAAGTTGTTTTGTTT1580.10597128044159171No Hit
TAATCTGGGTTTACTGATAAACTATAAAAGACTTTTTGAAGGATGCTGAAAA1580.10597128044159171No Hit
CAAGATGGGGTTTGGAAGAACCATCCCTAACCAGAAATGAACTAATCTAAGG1570.10530057613499935No Hit
GGTAATGGGTATACTTTAAGTCAAAAACTTTCACAAGGACAAAGAAGCTAAT1570.10530057613499935No Hit
TAAATTGGGCAGAAAAGGAGCACGTGAATTGAGTCGCCTGGCGGCTCTGTAC1570.10530057613499935No Hit
TTTTAGGGTAGCCAAGGCAATCAGGCAAGAGAAAGCAATAAAGCGTATTCAA1570.10530057613499935No Hit
TGCAATGGGAGATATAATGGCTTTTTTAAAGTAATGCTTCTATTTCTTTTGA1570.10530057613499935No Hit
ACGTATGGGGGAAAAAACAATCCTAAAATTCACGTGGAACCACAGAAAGCAC1570.10530057613499935No Hit
ACCTGGGGGTTTCCTGTGGTCATGATCAAGATAGTAGTATTATTACACAAGA1560.104629871828407No Hit
TGAAGCGGGCAAGGAAATCCCCGGGAAGAGTTAGCCTGGATAGCCTTGAAAA1560.104629871828407No Hit
TATTGGGAGGATAAAGAACAGATCCTAAAAGCAGCAAGAGAAAAGAAACAAA1560.104629871828407No Hit
CTCTCACTGGGCGATCTAGCTTCGGGCACTGAAGGCAAATCTCCTTTGTCCA1550.10395916752181467No Hit
TATTGTCGGGGATGGACCAGGCAACAGACCCCAACATCCTTGGCAGAACCTG1550.10395916752181467No Hit
AAATTAGGGAAGGGCAGGAAGATGTGACTCAGCCATGACACGTGGTTCTGGT1550.10395916752181467No Hit
ACTATGGGAGCCTCCCAAAGTGTTGGGATTACAGACATTAGCCATCACGCCT1540.10328846321522231No Hit
TATAAAGGGGAGGGCAGGTACAACTATTAAGAGATTTTGAACATTAAGTTAG1540.10328846321522231No Hit
AGTTATGGCAGGAACCATATTTTCTATTTCTATTGCATCTCCCTAGGGTATC1540.10328846321522231No Hit
TTAGCTGGGTATGGGCCTCATTCTAATTCAGAAAGCTTGTTTAAAAGAACTA1540.10328846321522231No Hit
TGAGCGGGGAAGAGCATGTGGGACATTGTCCAGAGTATATAGTGTATTAGGC1540.10328846321522231No Hit
GGCCGCGGGGGGAAAGAGGCTATGTGAAAGGAAAATGAATTTCTAGAGCAGC1530.10261775890862995No Hit
TTAGTAGGGGCTTTGGAAGAAGTCTCTATTGAGACAATTGAGGCTGGCTTCA1530.10261775890862995No Hit
GCTAATGGGCTGCATGGCTGGCTGCTGTCTGAAGCTATTTGGAGTCCTCTCC1530.10261775890862995No Hit
AATCTTGGGAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCT1520.1019470546020376No Hit
AGACTTGGGGAGGGTTTTGAATGGTGATTTGTTCCCAGTTGGTAGTGTGCCT1520.1019470546020376No Hit
GTCTATGGGGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCA1520.1019470546020376No Hit
CGAACTGGGGACTTGCTGCATAATACACAAGCTGGTCATTGCCTGCAAGAAA1520.1019470546020376No Hit
GAATGTGGGCAAAAACAAGACAAAACTAAAAAAATACAACTGAGAAGGGTGA1520.1019470546020376No Hit
TGACCCGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCC1520.1019470546020376No Hit
TGTTGCCGGGTGCAACAAAGATGCTGGGAAGTGGTTAAGTGTGCCCACCCGT1510.10127635029544525No Hit
TCGGCAAGGGAGCCCAGATGCTCTTAATTAGGAAAATGGCTAAATAAATTAT1510.10127635029544525No Hit
TCTGGTGGTACCTTAAAGAGATAAAATGCAGACATTCCTTGCTGAGTTTATA1510.10127635029544525No Hit
GCTCTTGGGTGATGTCTAAAGCTTACCAACAAAAGAACCCTCAGCAGAATAA1510.10127635029544525No Hit
AGACTAGGGGAAATACTTTAAAAAACGTGTATAAACTATTCTCATTAGCATG1510.10127635029544525No Hit
TCTTTGGGGGGAAAAATACTCTTTTCATAATATGAAATGCATAAAGCAGTTC1510.10127635029544525No Hit
CTTGGAGGGGGGCCTTTCTGGTGCTCTCCAGATGCCCCCACCTCGTTCTGCT1500.1006056459888529No Hit
TCTGGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCT1500.1006056459888529No Hit
CTTATTGGGGGGCAGTGGTGCTGGGAGTGTCGTGGACGCCGTGCCGTTACTC1500.1006056459888529No Hit
AAGGGGGGGTATTAATGAAATTCAGTTCATGCTATATTTTTCTGAGTTGTAT1500.1006056459888529No Hit
TGTAAAGGGCTGTGAGTCTTGCCGGAAGCTGCGAGGAGACGAGGCCCACAGG1500.1006056459888529No Hit
TTAAGCGGGAGAGCCTGAGGGAAGTGGGCAATGCCATCCTCTTCTGCCTCCT1500.1006056459888529No Hit
TCACGCTGGGAGGCCCAGGCCGACTCCCTCACCGTCTACCTGGTGGTGGCAT1500.1006056459888529No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)