FastQCFastQC Report
Sat 31 Dec 2022
SRR5847235.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847235.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209936
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGC20680.9850621141681275No Hit
CTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGCCGTCT19800.9431445773950156No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGG2630.12527627467418642No Hit
GCGCCTGGGAGATATTTTTTAAAGCAATATTGCTATTATTTTTGTCTTTGTG2610.12432360338388841No Hit
ACTGCTGGGATTACAGACATGAGCCACTGTGCCTGGCCTTTTTCTTGCCCAT2570.12241826080329242No Hit
CAATAGGGGGAGACAAAATGGGAATACAACAACGTGGGCACTGACCTGTCCC2370.11289154790031247No Hit
ACCGTTGGGTATACACTGAAACTACAAGTCGACTAAAGAATTACCAAGAGAA2330.11098620531971648No Hit
GAAATAGGGATAGGCCACATGACCAGCCTTCCTTAGGAAGGACCCACCCCTG2300.10955719838426949No Hit
CTTAGCGGGGTGTGGGCGAAATGCTGAAAACTTCGACCGATTTTTCACCCGC2230.10622284886822651No Hit
TTAGCGACGGGGAACACTGAGAGCTACAGATTTTCCTCTAAGCATCACACTA2220.1057465132230775No Hit
AGGCCAGGACCAGGTTGGGCTGGCAGTCCCAAAACTGAGAAGGAGAAGGGCA2190.10431750628763052No Hit
CTCGCAGGGCTGATGTACAATTTTTTATCCCTCAACCCACTCCCACCTTTTC2130.10145949241673652No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)