FastQCFastQC Report
Sat 31 Dec 2022
SRR5847234.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847234.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences210265
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGC20270.9640215918008227No Hit
CTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGCCGTCT19240.9150357881720685No Hit
ACTGCTGGGATTACAGACATGAGCCACTGTGCCTGGCCTTTTTCTTGCCCAT2500.1188975816231898No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGG2480.11794640097020426No Hit
TTAGCGACGGGGAACACTGAGAGCTACAGATTTTCCTCTAAGCATCACACTA2350.1117637267257984No Hit
GCAAAGCGGGCACTTTTAGGTAGATAAGGCTACCGTCTCTATAGGTGATGGG2330.11081254607281288No Hit
CAATAGGGGGAGACAAAATGGGAATACAACAACGTGGGCACTGACCTGTCCC2320.11033695574632012No Hit
GCAAAAGGGCTAGTAGGGATGACTATTATTGAAAACTCAAAAAACAACAGAT2250.1070078234608708No Hit
AAAACTGGGAGGGCATTTATCTATTGTCCTTGTGATAGACATTTGAGTTATT2210.10510546215489977No Hit
ACCGTTGGGTATACACTGAAACTACAAGTCGACTAAAGAATTACCAAGAGAA2190.10415428150191426No Hit
ACACCAGGGATGCTGATTGATGCTGAAATTGCTTTTGAAAGTTCTCATAAGT2180.10367869117542149No Hit
GATCGCGGGTGGCTGAAAAACTTGGCATTCATCCCAGCAGCTGCCATGGATG2160.10272751052243598No Hit
GAAAAGGGTGAACAGACATTTCTCAAAAGAAGATGTATATGCGACCAACAAA2140.10177632986945045No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)