FastQCFastQC Report
Sat 31 Dec 2022
SRR5847203.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847203.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences277202
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGCCGTCT24170.8719273309716381No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGC20000.7214955159053686No Hit
TGTTCGGGAGCGCCTCTTCCCTCACACTCTGCCAGGCTGCCGGGAGCTTGGG3460.1248187242516288No Hit
AACACGCGGGACAGTTAATGTCTTTGATAATTTTTTATAACTTTAAGAAATG3040.10966731841761602No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)