FastQCFastQC Report
Sat 31 Dec 2022
SRR5847199.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847199.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences188744
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGCCGTCT26221.3891832323146698No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGC24051.2742126902047217No Hit
TACACTCGGGATGCAGTATTAGATGGCAATAAGCCTCCTTGCAATAGCAGCT3190.1690119950832874No Hit
ACACTAGGGGATTGTTGATGATGCCACAGCAGGTTACTAAATTCTGCTCAGA3060.16212435892001864No Hit
ATGGCCGGGCTGAGGATTGTATTTCAGAACCACCAACTGCTCTTGACAATTG2920.15470690459034458No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGG2880.15258763192472344No Hit
ACGATTGGGGCTGAAAAAATTCTTTGGAAACACCTCCCTCATCAACTCCTTG2770.14675963209426524No Hit
AACTAGGGGGACGCCCTGTGGATGGCCACTCTGCCCATCAAGCTGCCGGTGG2680.14199126859661765No Hit
CGGTGAGGGACACATGTATTTTCTCCATAAGGTATATCACAGCCATCTTGCA2600.13775272326537533No Hit
TTGCTTGGGATTCTAATCTGATTGATTCAAGTTTAAGTTGCTCATAATTTTT2580.13669308693256474No Hit
TGAGGTGGGATGAACATTTGGTACATGTGCCAGTTCAACTTATTCTTCATAA2540.1345738142669436No Hit
GTCCTAGGCAGACACGTAAGTCAATGGAATGGAGACGAGAGATTTCTACAAA2530.1340439961005383No Hit
TCGTACGGGCCAAACCCAAAATTGGTAACAGAAAAGAAATAATAGAGATCAG2490.13192472343491712No Hit
ACCCGAGGGCACCCAGACACTCTGAGGGCTTTATGATCCATTGTGAGGGTTA2450.12980545076929598No Hit
TAAGTTGGGGTGCGCACATGCAGCTTTGCTTTCCTTAATACATTATCTGCTA2430.12874581443648542No Hit
TCTTCAGGGCGCTCTTCCGATCTTATGCTGGGATGACAAGGTGAATTTCCAT2430.12874581443648542No Hit
TACGTAGGGACTCTTGACACAGATAACTTCAGACTGATCTTCTGTCCAAGGA2430.12874581443648542No Hit
AATTGGGGGAGCCAGTGTGATGCTGCTTCCCAGACGGTTACTGGTCATCATT2410.1276861781036748No Hit
TACATGGGGGCTGTTTTAATGGACAGATTTGAATGTGGCTTTCTTCTTATAG2400.1271563599372695No Hit
GACGCAGGGGAGGTGACTATGTTTTTTAACTTTTATTTTAGGTTCAGGGGTA2380.12609672360445895No Hit
AGCGTAGGGGAACTGCTTTGAGGTGCCTTGGAACTGGCTTTGGAAATAGCTA2370.12556690543805366No Hit
GATGTTGGGATATGTTAGTTAGGACAAACGTATTTTGCTTTCCCATTAGCCT2350.12450726910524308No Hit
CCTGACCGGGCAATTGGAAACCATGTGAGAACAACGCTTCAAATGTATTAGA2310.12238799643962191No Hit
GCAATTGGGGTATTCAAACGGTGTTGCAACTCACAAGTAAAGGAAACGTCTG2310.12238799643962191No Hit
CGTTATGGGGTGTCCCAACAACGATATGAAAGAGCTTGTTGGATGAAGTCTT2310.12238799643962191No Hit
CGACTAGGGCGGGATGGAGGAGAGAAGAGGGTAACATTTCAAAGGTGCCCTC2300.12185817827321663No Hit
TTTATAGGGATGGGGTTGGCATTGAATCTATAAATTACCTTGGGCAGTATGG2290.12132836010681133No Hit
CTAAATGGGAAGGAGAACTACAAACCACTGCTCAACGAAATAAAAGAGGACA2280.12079854194040605No Hit
GCAATAGGGATGAAAGGAAGCTAAGAACCTTGATAAAAGGTTAGAGGAATTG2270.12026872377400076No Hit
AGCCTTGGGTGATCAAATGACAGTGAACAAAGCCAGCCCAAGCTGGTAAGGT2260.11973890560759548No Hit
TTCAACGGGCTAATAGAAAAGTCATGGTTACATCAACTGGATACATACAGCC2260.11973890560759548No Hit
GATTCAGGATTAATAATATTGCTGGGGAATGGGGATGGCCTATGCAGGAATG2250.11920908744119019No Hit
TTGCATGGGAACTATAACATATTCATACAATGAGCTCTTACTGCTTATTTGC2210.11708981477556901No Hit
AACGCTGGGTACAGGAATCACAGCTCTCAATAGCATAGAGGGTGTTTATAGG2210.11708981477556901No Hit
TAGTGCGGGGGCTGGAGTGGAGTGCAAATGGCTTGATCTCGGCTCACTGCAA2200.11655999660916373No Hit
ACCGCCGCTCCAGCGCCGCGCAGCCACCGCCGCCGCCGCCGCCTCTCCTTAG2180.11550036027635315No Hit
CGTGGCGGGAGGCCTCTCTCCTGATACAGCAGGCGCTCACCATGTTCCCTGG2150.11391090577713729No Hit
TAGTTGGGGTAATTTCAAAAGCTCTCATTAAACATTTTGTCATTGTTGTTGC2150.11391090577713729No Hit
TTGTGCGGGGAATGTGAAATGTTATGGGTAGTTTCTTATAAAATGACACGTG2140.113381087610732No Hit
CATGGCGGAGTTCATATTGACAAAGGCATGAAAGATGGCCAGAAGATAACAT2130.11285126944432672No Hit
TTGCTTGGGATCGTCAAATCAAAGCCACCCTCAGTTTTTTGTATGGTGCCAT2130.11285126944432672No Hit
CTCAATGGGTCTGGCTACGGGACTTTAGGGACTTCCACAATTATGTTCTGAT2120.11232145127792142No Hit
GCTTACGGGCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGA2120.11232145127792142No Hit
CGTAATGGGAGCTGGTAGGTGACTTTCTCAAAATTCTTAAATTCAGAAAGTA2120.11232145127792142No Hit
TTTTGAGGGAAGATAAATCTTTTACTACACTGTAAACAATGGAGTGGTGGTA2110.11179163311151613No Hit
GAACCAGGGGGTGGTACATGCCTGTAGTCCCAGATGTTCAGCAGACTGAGGT2110.11179163311151613No Hit
TCCGCTGGGGTGATACTGTTAGCATTCAAAACAAAGAACAAATTAGTAATGG2110.11179163311151613No Hit
TGCTTGGGTGTCCTCACAATTTTATAACAAATGACTTTTTTTCCTTAGGGGG2110.11179163311151613No Hit
CAATACGGGTCAGGCGTGGAGGAACCATGGTAACCTATGGGGGGATGGCCAA2080.11020217861230025No Hit
ACAGTGGGCCACGTGGGCAGCCTTCTGCTTATGACAATAATTGGCCCATTGC2080.11020217861230025No Hit
GCCCGAGAGAATGTGTGGAAGTTCTTCACCATTTTCACTCCTATATTTTTCT2080.11020217861230025No Hit
CTACGAGGGCAAACTCCTGACCTCAGGTGATCCACCTGCTTTGGCCTCCCAG2080.11020217861230025No Hit
AGTTTTGGGGGGAACATCTGAATGCTGAGGCCTAGAGATCGTTCAGGGTGTT2070.10967236044589497No Hit
CACCTAGGGTCCATTATCAAAATTGACTGGGGATTAACACCGATGTTAGAGT2070.10967236044589497No Hit
GGCATGGGGGCCCCGCCGCCGTCGCCGCCATGACGGGGCTAGCACTGCTCTA2070.10967236044589497No Hit
AGATTGGGGGGAGGCGGCGGCGGGCGCGCGGCGGCGGCGGGCGTGCGAGGCT2060.10914254227948968No Hit
CGCGCAGGGTGGAAAAGAATAATAAAAATATTTGGATACAGCAAGTCAAAAA2050.1086127241130844No Hit
ACGGAGGGGTGTTAGGTACAATGACAGTCTCCATTTTCTAGGTAAGAAAACT2050.1086127241130844No Hit
TACATCCGGGATGTGTAATAACCTTTAATAAAAATATATCCTCAGTTTTTCC2050.1086127241130844No Hit
TCGGACGGGAGCATTTGTAAGATGCTGCACAGGAGCAGCATTATCCCCAAAG2050.1086127241130844No Hit
ACACACGGGGTTATAATCTTGAACCTTAAACTTTCCAAGGATTGAGATTTCA2050.1086127241130844No Hit
TTGTTAGGGGTGGGGCTGCTTTTATCTCAAAGGTAACCCATCTACCCTGCTC2040.1080829059466791No Hit
GTAATAGGGGAAAGTAATTGACACTTTGGCATTGAATGAGGTTACAACAAAT2030.10755308778027381No Hit
CTATAGAGGGGAACTGATTTCTCTTTTTTATCCACTAATCTGGTTTTTAAGT2030.10755308778027381No Hit
AATCCTGGGGCTTTTATTAAAATACAAAATTAAACAAACAAAAAAACTCATG2020.10702326961386853No Hit
CCATAGGGGAGGAAAGGACGTTGAATTTGAAGTTGTTGGTGATGCCCCGGAA2020.10702326961386853No Hit
TTTTGCGGGGTTCTGGGCCCTCATCCCCTAGATCCAGGGACCCCAGCCCCAT2010.10649345144746324No Hit
TGCTGTGGGACCTCCTTTATGAAGACCTTCATAAATTCTAGGATGGTGAATT2010.10649345144746324No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGGA2010.10649345144746324No Hit
CTCAACAGAGAAAGGTGAGAGTCTGTTATTTGTTAGGTTTCCTTGTCCATAT2000.10596363328105793No Hit
CTTCAAGGATTACTGGATAGAATTCAGGCTTTCCCCTCCAGCCCCCAATCAT2000.10596363328105793No Hit
GTTTATGGGATCCTGAGTTATTTTGGTTTCCCGTTATGTGAATATCCTTTTC2000.10596363328105793No Hit
TTATCTGGGAACTTGAAACTCTTATCAAAATATATTTTACCAGTTTCCAGAA1990.10543381511465265No Hit
GATCGCGGGAAGGAATAACCTCTATGCTTATTATCATATTTTTTAAGGAGCC1990.10543381511465265No Hit
GTGAATGGGCGAGCGGGCAATTTAGAGATGATCAGCCAATTCTGTATTCCAG1990.10543381511465265No Hit
CGCAGGGGGTTCTGAACTCCCAGATCTGAGAAGGAACTAGTGTTGGTGGTAT1990.10543381511465265No Hit
CTATTTGGGACTTGGGACCAAAAAGAATGCATAACTTTCCAATTTCCTTTAA1980.10490399694824735No Hit
TAGTTAGGGTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCC1980.10490399694824735No Hit
TGTTTAGGGCTGGCATAGGGCAAGCAATTCTTCTGCCTCAGCCTCCCAAGTA1980.10490399694824735No Hit
CGCAGTGGGCTGCTTACATAAGATGAAATAGATTTTAAGTCCAAACCTGTCA1980.10490399694824735No Hit
AGAAATGGGTTATGGCTCTATTTTGTAAAACAAACTACTGGTAATTATTTTT1970.10437417878184208No Hit
ATTCAAGGGATCCCTCTTACTGGTTTGTCTGTAATGAATGGTTAAAAATAAG1970.10437417878184208No Hit
TGTCTAGGGGGGGATTAGAAAAATGAGGCACTGGCTACCAGTAACCTATATA1970.10437417878184208No Hit
CTATCAGGGGAGAAGGCATCCCACTAGCGATCAGCTGACATTCCTAACTGAA1950.10331454244903149No Hit
TTTTATGGGGGGCATCAGTTCAAATTTTCATGAATAACTGATTTTAAGAGAC1950.10331454244903149No Hit
CATGGTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1950.10331454244903149No Hit
CCTTTAGGGCTGCAGGGCGGGCAAGCAAGCTTACAGAAGCAGAACAAAGGCA1950.10331454244903149No Hit
AGCTTCGGGGTTGCTCGGGCAGCCCAGCAGCGGCGCGGCCGCCGAGCCCCTG1950.10331454244903149No Hit
TTGTAGGGGAGCCTCACAATCATGGCGGAAAGTGAAGGAGGAACCAAGGCAA1940.10278472428262621No Hit
AAGACAGGGCTTGTTTGTTTAATAATAGAACTGATGAGTAGTTAATTTGAGA1940.10278472428262621No Hit
TCAGCATGGGGATTCAGATCAACTGGTGTTGGAAGTTATGTAGAGATGTCAT1930.10225490611622091No Hit
AGCTCAGGGTAATGGATAGAGACCTTGTACACAGACAGACGGCTAGTGCAGT1930.10225490611622091No Hit
AGTTCAGGGATTACTGCTCAAAATAAAAATTGTCTACTGAGGAAGCTAGATG1920.10172508794981563No Hit
TCAGGTAGGGGTCCTGTGTCATGTGGGTTTAGTGAGGCAGGGAAGGAAACAG1910.10119526978341034No Hit
CACAGTGGGACAGTGGACTTAGGATGGGATTGAATGTTCAGTATAGTGATCT1910.10119526978341034No Hit
ACCTTGGGGCTCCTAATCAATGAAGAAAGTGAGTTGGATATTTTTAAAGCAG1900.10066545161700503No Hit
ATTCTAGGGGCAACCCAATATTTATTTCATAAAGTGTTATAAATATTGAGAA1900.10066545161700503No Hit
GCATTTGGGATTACAGAATAGTATTTGGAAACCATGGTTGGGGAGTAAGGCA1890.10013563345059974No Hit
GTATTAGGGCGATCTGTGACTGGGATCTGGTGTGTTTGTCCTGTATTTACAG1890.10013563345059974No Hit
CATGCAGGGGAGTGTCATTACCTGTGAGCTGACTGAATGTTGGTAGGTGCTC1890.10013563345059974No Hit
ATATGAGGGGGTCTTTGGGGGTAGGCGGTAGTGGCGGAAGAGGTTCGGCGGC1890.10013563345059974No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)