FastQCFastQC Report
Sat 31 Dec 2022
SRR5847106.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847106.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences147228
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGCCGTCT7320.4971880348846687No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGC6890.46798163392832887No Hit
TATAGTGGGTCTATACATTGATGTCTTTATCAAAGTGCTTCGTTGGTCTTTG1900.12905153910940853No Hit
TACATTGGATGTTAGTAGAAGGAAAAATAAAGATCAGAGCAGACATAAATGA1870.12701388322873366No Hit
TCAGTGAGGGTCTGCACATAAATAAATAAATGACAAAAGAAAGAAAAAAAGG1850.1256554459749504No Hit
AGAAATGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1800.1222593528404923No Hit
AATGCTGGGATTACAGGTGTGAGCCATGGCGCCTGGCCGTAAATTTTAAAAA1760.1195424783329258No Hit
TTAAGGGACCACCCGGTGTTTCTCTTGAGTCTTTACACTTGAGACTTCTGTT1710.11614638519846768No Hit
GTTAGTGGGTCTAACAGGGAACATGAATCCCCAAATAAATTATCTTACAAAA1700.11546716657157606No Hit
GTCTACGGGGAAATCAAGATGGACATTTCCCTATGTTAAAAAAAGTCAGTTT1680.11410872931779281No Hit
GTGGCCGGGCATTCTTTTCAGGCAGAACACAGGTTTAAGGAAACAAGAGGGG1680.11410872931779281No Hit
TACCTTGGGTGGAGTAACCGCTTCCTAAACCATTTTGCAGAAATGTAAGGGT1680.11410872931779281No Hit
ACCACGGGGTCGTGTTAATGTAGCACAAAAAATATATTTTAATGAAGATTAA1670.11342951069090118No Hit
TTCGCAGGGATTTTAGGAAATGGAAGATAAAGTGACTAGTCCAGAGAAAGCA1650.11207107343711793No Hit
TGCACGGGGGCCAGCAAAAGGTATACAGTTATTAAAAAACATGTCTGATTTT1620.11003341755644308No Hit
TCACTGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1600.10867498030265983No Hit
TGCCATGGGCCACCATAAAGGCTCCCTTGAAACCATATCCAGTTTCTCCATC1600.10867498030265983No Hit
TCAAATAGGGCACTGATTTTTCTCTCAGATTCCTTTTCCATCTCTCATCCAT1600.10867498030265983No Hit
GTGCCAGGGCCTTATTTTTTACTTTGGAAGGGGTCTGATGCAAATTTACACT1600.10867498030265983No Hit
TAGGTTGGGACGAAAGGACAAGAGAAATAAGGCCTACTTCACAAAGCGCCTT1580.10731654304887658No Hit
AATGGAGGCCTCTCTTCCATGCCAACATTTCTCCACCCACAACGTACACTTT1580.10731654304887658No Hit
TTGAGTCGGGATCTTCTAAAAAGATTATTTCCATTAGTTGTTTCCAGGTACT1570.10663732442198494No Hit
GAGTCAGGGACACCTATAACTGCTTAACAGATACTGTTGAATGAATTGAAAT1560.10595810579509334No Hit
AGCATAGGGAGTACTCAAAATGCTTTGAATTTTGGAACATTTTGGGTTTTTG1560.10595810579509334No Hit
GCAATCCGGGTCATCTGAGATCTTCAGAGTTAACATTGAGGATGGTTTGGGA1550.10527888716820169No Hit
CGTTAAGGGGCCGCTGGGCCTGCAGGTCTCTGTCGAGCAGCGGACGCCGGTC1550.10527888716820169No Hit
AGACTTGGGACATCTACTCTTCCATGGCCCCATTTCTCCATTTTGTGGACCA1550.10527888716820169No Hit
AACTGGGGGAACTAGAAAACATAAATTACTGTAGATCCCCTGAATGCAGAAA1550.10527888716820169No Hit
ACAGTTGGGTATGTGACTCTAGTTCAAAATATTCTGGCTATCATTTGATTAT1550.10527888716820169No Hit
GTTTCGGGGCAGAACTAAATGAAATTGAAACAAACAAAAACAATACAAAAGA1540.10459966854131009No Hit
TGGACCCGGGGGCTACCTGGAGGAGCTGGTGCGTCTGCGCGAGTCGCAGCTG1530.10392044991441846No Hit
GACATCGGGCAGCAATGATGATATAGTAAATACTGAAATTTAGGTGTAAATC1530.10392044991441846No Hit
TGACACGGGAGGGATCAGAAGCAGGTGGTAAGTTTGGAGACTGAAACATCAT1520.10324123128752684No Hit
AGTAACGGGATGCTCTCTTGATCTAAAACTTGTAAGTTAAATCTCTCTGCTC1520.10324123128752684No Hit
GTAGAAGGGGGGCTTCCAGTACTTCTGTTGATTAGATATGGTCCCAAAAGAA1520.10324123128752684No Hit
CCTGCAGGGTATCACATTAATTACAAACCTTCAGGGCTCGCCTTTGTCCATT1520.10324123128752684No Hit
GGCTCAGGTTTCAAGACCCATTAGCAAGGGAGGAAAAAGATGTTAAACTTTG1520.10324123128752684No Hit
AGGCAGGGGCTGACAAGGTAGAGTCAGGGAAGACGTCTGTGGTAGTGCATTG1510.10256201266063521No Hit
GGAAAGGGAGCTGGGACTGCAGGCATGTGCCACCACTCCTGGCTAATTATTT1490.10120357540685196No Hit
TGTCATGGGGACAGAGTCTGAAAATTCAGCTTGTTCCAGAATGCTTATTGGA1490.10120357540685196No Hit
TCACTAGGGCAGTTCTGCTCTGACTTAGTTATTTCTTGCCTTCTGCTAGCTT1480.10052435677996034No Hit
CCACCAGGGACCTCCTCAACCTTAGTTTCCCTTATCTACACATGCTTTTCCT1480.10052435677996034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)