FastQCFastQC Report
Sat 31 Dec 2022
SRR5847105.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847105.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149049
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGCCGTCT7270.4877590591013693No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGC6750.4528712034297446No Hit
TATAGTGGGTCTATACATTGATGTCTTTATCAAAGTGCTTCGTTGGTCTTTG2000.13418406027547988No Hit
TCAGTGAGGGTCTGCACATAAATAAATAAATGACAAAAGAAAGAAAAAAAGG1900.12747485726170588No Hit
AATGCTGGGATTACAGGTGTGAGCCATGGCGCCTGGCCGTAAATTTTAAAAA1880.12613301665895107No Hit
GCATTAGGGGAGGCAAAGACAACAGTCTTAATGCTTTTCCTACAAGAGAGAC1790.12009473394655448No Hit
CATCAGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1780.1194238136451771No Hit
CGTTAAGGGGCCGCTGGGCCTGCAGGTCTCTGTCGAGCAGCGGACGCCGGTC1750.1174110527410449No Hit
GTTAGTGGGTCTAACAGGGAACATGAATCCCCAAATAAATTATCTTACAAAA1750.1174110527410449No Hit
GGTTAAGGGATTAATCCCCTGGCCCAACCCGTCATCTACTCTACCATCTTTG1740.1167401324396675No Hit
ACAGTTGGGTATGTGACTCTAGTTCAAAATATTCTGGCTATCATTTGATTAT1740.1167401324396675No Hit
GTCTACGGGGAAATCAAGATGGACATTTCCCTATGTTAAAAAAAGTCAGTTT1730.11606921213829009No Hit
AGTAACGGGATGCTCTCTTGATCTAAAACTTGTAAGTTAAATCTCTCTGCTC1720.11539829183691269No Hit
GTAGCCGGGAACATAGGTCATGTTCAGTAAATTTAAGCATGCTTGTGTTAGA1710.11472737153553529No Hit
AATTATGGGGTCCTAGACATTTTGCACTAAAGTAGCCGAATCCACTCTCATG1690.11338553093278049No Hit
TTCGCAGGGATTTTAGGAAATGGAAGATAAAGTGACTAGTCCAGAGAAAGCA1650.11070184972727089No Hit
GAAGCAGGGAAGGAATGTCATTATATAATGATAAAGGAATCAATTCAGCAAG1630.10936000912451611No Hit
GGAGGTGGGCGATCTGACCTTGGGGTCTTTGAAAATGAACTAAGTTTTTTTT1630.10936000912451611No Hit
TGCACGGGGGCCAGCAAAAGGTATACAGTTATTAAAAAACATGTCTGATTTT1620.1086890888231387No Hit
AGGCAGGGGCTGACAAGGTAGAGTCAGGGAAGACGTCTGTGGTAGTGCATTG1620.1086890888231387No Hit
TGAACAGGGATTTACTGTATATGAAGAACATTACTTAATATTTCAGTAGAAA1610.1080181685217613No Hit
CGTACAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1610.1080181685217613No Hit
CTATGTGGGATATACAAATAACAACCTAGATGAAAAATTCAAGAAAATAATC1600.1073472482203839No Hit
TACATTGGATGTTAGTAGAAGGAAAAATAAAGATCAGAGCAGACATAAATGA1590.1066763279190065No Hit
AGCCAGGGCACTCTTAATTGAAACAGCCTCTTCTCTAGTCAAGAATGCTATT1590.1066763279190065No Hit
TCATAAGGGGAGTTCTTTTAAACTTTAATGAATGTTGAATTTCATTGAATGC1580.1060054076176291No Hit
TCAAATAGGGCACTGATTTTTCTCTCAGATTCCTTTTCCATCTCTCATCCAT1580.1060054076176291No Hit
GTGGCCGGGCATTCTTTTCAGGCAGAACACAGGTTTAAGGAAACAAGAGGGG1580.1060054076176291No Hit
TTAAGGGACCACCCGGTGTTTCTCTTGAGTCTTTACACTTGAGACTTCTGTT1580.1060054076176291No Hit
ACGCTGGGATTACAGGCACCCGCCACCATGCCTGGATAATTTTTGTATTTTT1570.1053344873162517No Hit
AATGGAGGCCTCTCTTCCATGCCAACATTTCTCCACCCACAACGTACACTTT1570.1053344873162517No Hit
TGTCATGGGGACAGAGTCTGAAAATTCAGCTTGTTCCAGAATGCTTATTGGA1560.10466356701487431No Hit
CCACCAGGGACCTCCTCAACCTTAGTTTCCCTTATCTACACATGCTTTTCCT1550.1039926467134969No Hit
GAAAAAGGGCATATTTCTAAAGGTTATTTTGTTAACATTTTGCACATTGAAT1540.10332172641211951No Hit
GACATCGGGCAGCAATGATGATATAGTAAATACTGAAATTTAGGTGTAAATC1540.10332172641211951No Hit
TACGCAGGGGACTCGCGCAGACCTAGCGCGTCCAGGTGGGAGGTTAGTGTGG1530.1026508061107421No Hit
AGCATAGGGAGTACTCAAAATGCTTTGAATTTTGGAACATTTTGGGTTTTTG1530.1026508061107421No Hit
GGGTCTGGGACTAAACATCAGATAATTTATACTGGAGAGGAACCATACAAAT1520.1019798858093647No Hit
GTGCCAGGGCCTTATTTTTTACTTTGGAAGGGGTCTGATGCAAATTTACACT1520.1019798858093647No Hit
TCACTGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1510.10130896550798732No Hit
GCTCCCGGGGGGCATCAGATGCAAAATTAAAAACAAATTGATCCATATCTTA1510.10130896550798732No Hit
TGACACGGGAGGGATCAGAAGCAGGTGGTAAGTTTGGAGACTGAAACATCAT1510.10130896550798732No Hit
AGGATAGGGGTAATAATACAGTTTATAATGAAACTATCTACAATTCTTGTTT1510.10130896550798732No Hit
GTTTCGGGGCAGAACTAAATGAAATTGAAACAAACAAAAACAATACAAAAGA1510.10130896550798732No Hit
TAATACGGGTCTCAAGCGGGGATGGGCAATGAGATCGATACACAGAATCGCC1500.1006380452066099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)