FastQCFastQC Report
Sat 31 Dec 2022
SRR5847104.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847104.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143841
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGCCGTCT6830.47482984684478No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGC6290.43728839482484133No Hit
AATGCTGGGATTACAGGTGTGAGCCATGGCGCCTGGCCGTAAATTTTAAAAA2050.14251847526087832No Hit
TGACACGGGAGGGATCAGAAGCAGGTGGTAAGTTTGGAGACTGAAACATCAT1880.13069986999534208No Hit
TCAAATAGGGCACTGATTTTTCTCTCAGATTCCTTTTCCATCTCTCATCCAT1760.12235732510202237No Hit
GTCTACGGGGAAATCAAGATGGACATTTCCCTATGTTAAAAAAAGTCAGTTT1750.12166211302757905No Hit
TTTCTGGGGGAATTTTTAAAATTTGATCGTATTACAATTTATATGACTTTGG1730.12027168887869244No Hit
TCTCAGGGGATATCACTGCACTCCAGCCTGGGTGACAAAGTGAAATCCTATC1730.12027168887869244No Hit
GAGTCAGGGACACCTATAACTGCTTAACAGATACTGTTGAATGAATTGAAAT1670.1161004164320326No Hit
TATCCAGGGAAATGTGAATGGAAACTTGGAAATACTCGTTTTTATAAACTAC1640.11401478020870266No Hit
TCAGTGAGGGTCTGCACATAAATAAATAAATGACAAAAGAAAGAAAAAAAGG1630.11331956813425935No Hit
AATTATGGGGTCCTAGACATTTTGCACTAAAGTAGCCGAATCCACTCTCATG1630.11331956813425935No Hit
TATAGTGGGTCTATACATTGATGTCTTTATCAAAGTGCTTCGTTGGTCTTTG1630.11331956813425935No Hit
CTATGTGGGATATACAAATAACAACCTAGATGAAAAATTCAAGAAAATAATC1620.11262435605981604No Hit
AACTGGGGGAACTAGAAAACATAAATTACTGTAGATCCCCTGAATGCAGAAA1620.11262435605981604No Hit
AAATCAGGGTGTGGCAAACTTAGTGTTTGCTGTATGCCAAATGCCCTTTAAT1620.11262435605981604No Hit
ACAGTTGGGTATGTGACTCTAGTTCAAAATATTCTGGCTATCATTTGATTAT1620.11262435605981604No Hit
GAACACGGGGAATAATTGAAATGATTTTTATATTTTTTTGTTTAAACTGTTG1600.11123393191092942No Hit
GGCGGCGGGGGGGCCGGAGCGGCGGCGCCTGGATGCCGGCCCGGGGCTGGGC1590.11053871983648612No Hit
GTAGAAGGGGGGCTTCCAGTACTTCTGTTGATTAGATATGGTCCCAAAAGAA1580.10984350776204281No Hit
TCAAACGGGATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCCTATAT1570.10914829568759951No Hit
TACATTGGATGTTAGTAGAAGGAAAAATAAAGATCAGAGCAGACATAAATGA1560.1084530836131562No Hit
GCAATCCGGGTCATCTGAGATCTTCAGAGTTAACATTGAGGATGGTTTGGGA1550.10775787153871288No Hit
GTGCCAGGGCCTTATTTTTTACTTTGGAAGGGGTCTGATGCAAATTTACACT1550.10775787153871288No Hit
GTTAGTGGGTCTAACAGGGAACATGAATCCCCAAATAAATTATCTTACAAAA1550.10775787153871288No Hit
TGTCATGGGGACAGAGTCTGAAAATTCAGCTTGTTCCAGAATGCTTATTGGA1520.10567223531538295No Hit
AATGGAGGCCTCTCTTCCATGCCAACATTTCTCCACCCACAACGTACACTTT1520.10567223531538295No Hit
AGAAATGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1510.10497702324093965No Hit
GTTTCGGGGCAGAACTAAATGAAATTGAAACAAACAAAAACAATACAAAAGA1510.10497702324093965No Hit
AACACCGGGTATTTTTGAAGAAACGATCGCCTTGTTTTAACTTGCTAAACAA1490.10358659909205303No Hit
GACATCGGGCAGCAATGATGATATAGTAAATACTGAAATTTAGGTGTAAATC1490.10358659909205303No Hit
TTGAGTCGGGATCTTCTAAAAAGATTATTTCCATTAGTTGTTTCCAGGTACT1480.10289138701760972No Hit
GTAGCCGGGAACATAGGTCATGTTCAGTAAATTTAAGCATGCTTGTGTTAGA1480.10289138701760972No Hit
GTTAATGGGACGGAAAACAAAAAAAATTCAGAGTCCTGGGGAAAAATGTGAT1480.10289138701760972No Hit
CGTTAAGGGGCCGCTGGGCCTGCAGGTCTCTGTCGAGCAGCGGACGCCGGTC1470.1021961749431664No Hit
TCACTGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1460.10150096286872311No Hit
GCATTAGGGGAGGCAAAGACAACAGTCTTAATGCTTTTCCTACAAGAGAGAC1460.10150096286872311No Hit
ACTGTTGGGCTCAACATTCAAAGTGAGAAATAAAAAGCCTTTATTAAAAGTA1460.10150096286872311No Hit
TACGCAGGGGACTCGCGCAGACCTAGCGCGTCCAGGTGGGAGGTTAGTGTGG1450.1008057507942798No Hit
GGGTATGGGCATTAAACAGAAGAAATCATTTTTTTGCTATGTAATACCTCGC1450.1008057507942798No Hit
TGGCGTGGGAATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACC1440.1001105387198365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)