FastQCFastQC Report
Sat 31 Dec 2022
SRR5847088.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847088.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66539
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGC1990.29907272426697123No Hit
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGCCGTCT1840.27652955409609403No Hit
GAATGAGGGTCTGGGAGGTCGAGGTGGGTGGGTCACCTGAGGTTGGGAGTTC880.13225326500247975No Hit
TTAAATGGGCCGATCTCTCTAGGGGGGAAATTTTTAGCACTAAATGCCCACA840.1262417529569125No Hit
AGTTTAGGGGGAAATCCTTTGATTTTTGACTTTAGATGTTGACTTTGAAATA790.1187273628999534No Hit
TCTAATGGGATTGTTGATTGCCTCATGGTGTGTTTCCATTATTCAGTGCCTT790.1187273628999534No Hit
TGCTTTGGGAATGTGTTTTTATCCATCAGTTTCTGAGTAACAAAGAGCACCA760.11421872886577795No Hit
ATACATGTATTTATTTACACAGGCAAGCAAACAGAAATCCATGGGCAACATT760.11421872886577795No Hit
TGAACCGGGGATAATGAATTTTATCAAATGCATTTTCTACATCTACTGAAAG750.11271585085438617No Hit
ACTTTAGGGATTCCTAGAATATCACTATAAACCTAAATGATATGCTTACTCC750.11271585085438617No Hit
GAGCTAGGGACTCTGTGTGCCTCTTCTACATTGCATTCTGCTCTGCTATGTT720.10820721682021071No Hit
AAGATGGGGGGAGACACGTTTCTGAAGGGGCTGCAGGTGAGGCCGGCCCCTC720.10820721682021071No Hit
TTAACGGGATTACAGCAAAGCAGCATTTTGTTACTGACTGCCTAAAATCACT720.10820721682021071No Hit
CTTCTGGGGGGTTATGTGACTCATCTGCTATTTGGCAGCCACTATTCCTTTT720.10820721682021071No Hit
ATACATTGGGATCTTATTCTGACTTAATTACCGATATCCCCGAAGGCTAGGT710.1067043388088189No Hit
GCTATAGGGAGAAATGACCCAGTAAAAGGTATTTGGTTATAGCAGCACAAAT710.1067043388088189No Hit
GGTTACGGGATGAATGCAGATGATACCAGTAAGTCAGCTTGTTCATTTGCTT710.1067043388088189No Hit
ACACGCAGGGATGGTTTAACATATGCAAGTCAATAGATGTGGTACACCACAT710.1067043388088189No Hit
TTTACTGGGAAGAAAATACAGAAGTAAATCTTCCTGAGACTGGGTGGGTAAA700.10520146079742708No Hit
AAGATGGGGACTGATAATGAAAAATACTATATATAAACTTTTCAGTAAATAA700.10520146079742708No Hit
TTTAAAGGGTAGTGGGATGGCTGGGTCATATGGGTAGTTCTATTTGTAGCTT700.10520146079742708No Hit
GAGTCATCTGACACTGATGATGAAGAATTACGGCATCGAATCCGGCAAAAAC690.10369858278603526No Hit
GTATACGGGTCTGATCAGTAACTTTGTGTATGATGCTGAATTACAAACCGTT690.10369858278603526No Hit
TACATTGGGGGCCAGTCTGTTGTGGGCATTGTTTTCTACAACCAAATTCTGG670.10069282676325163No Hit
GCCACTTGGCCTTTTTGAACCCCCATTAGATGGTGAGCATTTTCCTTATCTG670.10069282676325163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)