FastQCFastQC Report
Sat 31 Dec 2022
SRR5847087.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847087.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66931
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGC1820.27192182994427094No Hit
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGCCGTCT1620.24204031017017527No Hit
TGCTTTGGGAATGTGTTTTTATCCATCAGTTTCTGAGTAACAAAGAGCACCA990.14791352288177376No Hit
TTAAATGGGCCGATCTCTCTAGGGGGGAAATTTTTAGCACTAAATGCCCACA920.13745499096084027No Hit
CAATCTGGGTATTTACTTTTGTAACAAACATTCACATGTACCCCCAAACCTA860.12849053502861155No Hit
GCTATAGGGAGAAATGACCCAGTAAAAGGTATTTGGTTATAGCAGCACAAAT840.12550238305120198No Hit
AAGATGGGGGGAGACACGTTTCTGAAGGGGCTGCAGGTGAGGCCGGCCCCTC830.12400830706249719No Hit
GTGGACGGGGAGGCGGGAAGAGGCGGTGCCGGGGGCGCTGGCGTCCTGCAGT810.12102015508508764No Hit
GGCACTGGAGAGACCATGGCATATTCACTTTTATCTCCTCAGTGACCAGCAG770.11504385113026848No Hit
AGCTCCGGGTGGCAATGATCAGGCAGCCCAAAAGATTTAAATGATCTATAAT730.10906754717544935No Hit
AGCGACGGGCTGGGAGGCTTTGGAATGATGAAAGCATGTACCCTCCACCCTT720.10757347118674455No Hit
TCCACAGGGACTGATGGAACGGGAACAGTCACCCCAGCCAATGCTTCAGGAA720.10757347118674455No Hit
TCAAGTGGGTGTGTTACTAAACCCTGGGGAACCATTAGGAAGAAATGCAGTA720.10757347118674455No Hit
GCTCATGGGGAGTGTGGCCCGGGCGTCCGCTCCTCAGCGGATGTGGCAGCCC720.10757347118674455No Hit
ACTTTAGGGATTCCTAGAATATCACTATAAACCTAAATGATATGCTTACTCC720.10757347118674455No Hit
TGAACCGGGGATAATGAATTTTATCAAATGCATTTTCTACATCTACTGAAAG710.10607939519803977No Hit
AGTTTAGGGGGAAATCCTTTGATTTTTGACTTTAGATGTTGACTTTGAAATA710.10607939519803977No Hit
ATACATGTATTTATTTACACAGGCAAGCAAACAGAAATCCATGGGCAACATT710.10607939519803977No Hit
GCAAAAGGGGGAATGATCCTCTTCGTGTAGTTTCATCTTTAGGCAGAACTAT700.10458531920933499No Hit
GGGCATGGGTTCCTGATTCAAGGTTGAGAACTTCCACATTTGCAATCTTATT700.10458531920933499No Hit
ACTCGTGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT700.10458531920933499No Hit
ACAAGAGGGGTATTTGATTGATGGAATTTTGAAGTAAATGTGTTTTTATCCA700.10458531920933499No Hit
AAGGCATTGCAGAAGAAAATATTTGCAATATCATTATTTAGCATTCTGAATA700.10458531920933499No Hit
ACTTCCGGGATTGTGAGTTCAACTTTGATAGAAACTGTTTTATCAGTGGTAA700.10458531920933499No Hit
TTCAATGGGATACTGTAAAAAGTCACTTTATTTTATTTTTCAGCATTATGTA700.10458531920933499No Hit
TCATAGGGGGGCGGACCCTTGGGGTCTGGACGCGACGGCGGCGGGAGCATGA690.1030912432206302No Hit
AGTTCCGGGATTAATCCCCTGGCCCAACCCGTCATCTACTCTACCATCTTTG690.1030912432206302No Hit
AGCAGAGGGCTGTCTCTGTTTGTAGACCATATGATTCTATACCTAGAAAATG690.1030912432206302No Hit
TATCTGGGGAAGCCCAGAAATGTTTCTGCGGATCAGCCAATTGCCGGGGTTA680.10159716723192541No Hit
AGATCAGGGAGCCTGGGCTCCACTATGGTCAGTTCAGTGCTAGGGAATTCCA680.10159716723192541No Hit
TTAACCGGGATAATTATGAGCCTGACAATAGTAACATATTGTCTCTACCATA680.10159716723192541No Hit
AACTGTGGGGAACTGGAATGAGAGGCCTGGGTCTGTCTCCTGCCTTAGCAGG680.10159716723192541No Hit
CTCAATGGGATGCCCGATTAATTTTTTGTGTTTTTGGTGGAAACGGGGTTTC680.10159716723192541No Hit
TTAGCCGGGGAATGAACGAATGAATGTACTATGAGCTGATACTGGGATTTCA680.10159716723192541No Hit
ATATGCGGGGGTCCGTCCGCTGCCTAGTCTGCATCTGAGTAACATGGCGGCG680.10159716723192541No Hit
TTTCATGGGACTGGACAATCTTTTCAGAAATCTACTTTTAGATAAACCAGCG680.10159716723192541No Hit
GAGCTAGGGACTCTGTGTGCCTCTTCTACATTGCATTCTGCTCTGCTATGTT670.10010309124322064No Hit
GCTGTTGGGGTTTGAAGTTGTGAGAAAGGATGAATATATCACCATTGAAAAT670.10010309124322064No Hit
GCTACGGGGGGTGAAACACTGAAGAGAAATTCAAGGAAGAGGAGGAAGACTG670.10010309124322064No Hit
TTCGCTGGGATGGGGAAGTGGTCCAGAGCGGCAACACCAACCAGATGGTATT670.10010309124322064No Hit
GGCCAGCAAAATTAGCTCTTTTTCTCCCAGAGAATACTATCTTTGCATAGAG670.10010309124322064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)