FastQCFastQC Report
Sat 31 Dec 2022
SRR5847079.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847079.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182088
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGC6850.3761917314704978No Hit
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGCCGTCT6800.37344580642326786No Hit
CGACCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAG2060.11313211194587233No Hit
GGTTTTGGGGGGAAAATTAACCGGCCTTCCAACTTTTGTCTGCCTCATTCTA1910.10489433680418259No Hit
ACAACCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1890.10379596678529061No Hit
TATCGCAGGGACGCTCTTCCGATCTTGCTGTGGGAAGGGCTGGTTTATGCAG1880.10324678177584465No Hit
CATTTTGGGAGCTGCCCCAGCTGCTGCCAATACATCAGTGTACCAGAGATGA1860.10214841175695269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)