FastQCFastQC Report
Sat 31 Dec 2022
SRR5847077.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847077.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176843
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGCCGTCT7100.4014860639097957No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGC6900.3901765973207874No Hit
CGACCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAG1940.10970182591338079No Hit
GACACCGGGATAACCTAGAAGTTGATTTTGATAACATTTGAGAAAACTTCAT1930.10913635258393038No Hit
ACTGCTGGGAGGAATTTTCGAAAATGAAACAATCTAATAATGAAGCTAACTT1880.1063089859366783No Hit
GGTTTTGGGGGGAAAATTAACCGGCCTTCCAACTTTTGTCTGCCTCATTCTA1850.10461256594832705No Hit
ACAACCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1830.10348161928942623No Hit
GAATAAGGGCAAGCATTTCTCCTTTGGGTTATAAACAATCCAATCACACTCT1790.10121972597162456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)