FastQCFastQC Report
Sat 31 Dec 2022
SRR5847060.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847060.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106807
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGCCGTCT6200.5804862977145693No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGC5750.538354227719157No Hit
CACAATGGGGCTGATGTATAGAAACTATATTAAACTTCCAAAGAAAGCACGT2200.20597900886646006No Hit
CCAAGTGGGGATATCATCTCAACTTAGTATTATACCCACACCCACCCAAGAA1570.14699411087288286No Hit
GCAAAGCGGGACGTTGCTTCGACAGCAACTGGATGATGCTCACAAGAAAGCT1470.13763142865168013No Hit
ACTCTAGGATTCTCCACAGGAGTTCAGCTCAAATGATCATTTGAAAAATGCT1410.1320138193189585No Hit
CTGCATCGGGTATCGGAAAGATCATCCTGCCTGCAGATGCTGTTGAAGGGGC1410.1320138193189585No Hit
TCGCAAGGGAAGTCCAAAACTAGATCCAATATCAGTAAGATTATCAATAAAC1300.12171486887563548No Hit
TTGCCTGGGGGCCAAGATGGCGGCAGCTGCGGCTTCGCTTCGCGGGGTAGTG1300.12171486887563548No Hit
AGGTGGGGGCGGCGTCGCCAGGAGGAGCGCGCGGGCACAGGGTGCCGCTGAC1290.12077860065351521No Hit
GATTCTGGGGAATATAGAACACAGAATGTGGCACGCTTGCCCATCATAGATC1270.11890606420927466No Hit
TCACCGGGGAAAGACAAACACTTTCCTTCTTATCTCAAGATATTTACCTACG1270.11890606420927466No Hit
TACTAGGGAACTGTAGTAGGTGTGTAGTTTGGGGAAGTCAAATGGCCATTTT1270.11890606420927466No Hit
TAAGCCGGGCATGAGAAGTATGACAACAGCCTCAAGGTCATCAGCAATGCCT1260.1179697959871544No Hit
CGAGTTGGGAATGGAATGAAACTAGAAATCAATAACAGAAGGAAAACTGGAA1260.1179697959871544No Hit
GTTAAGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1230.11516099132079358No Hit
GATGTAGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG1230.11516099132079358No Hit
ATGCAAGGGCTCATCTGGTAGTCCATTACTCTTCTCAGTCTATTTTTACATT1230.11516099132079358No Hit
AACTGAGGGAGTATTACAAAGAAAAATGCCCAGAAACTTTGATTTGAGTTGA1230.11516099132079358No Hit
GATACTGGGATATTCTAATGGGGAAGACCAACAATAAATGAAGAAGCAAACA1230.11516099132079358No Hit
GACTAGGGTGGCGCTGGGCAATAACAAATGGAAAATATTTGCAATTTTTGTC1220.1142247230986733No Hit
GCATTGGGAGTGCATTTTTTGTTCTATTTTTAGTGTAGATTTAAGCACTTTG1220.1142247230986733No Hit
TTCAATGGGAGAATTTAACATCCATTCCAATGTTGGAGGCTTGTATTACTTA1220.1142247230986733No Hit
TCGTTGGGGATTCCGTAACCCAGATGATGTCTTCAGGGAATTTTTTGGTGGA1220.1142247230986733No Hit
AGCAAGGGAGAATGGCTAATACTAAAAGGTTTAAAAATAACAGATGCTGACA1210.11328845487655305No Hit
TCTTGGGGGATCGCTTGAGTCATTTTTATCACAATAATCCTACTGTGAAGCT1210.11328845487655305No Hit
CAGTCTGGGTATTCTCATCAACTTCCCCAATGAAAGGAGATTAAATAAGAGT1200.11235218665443275No Hit
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCCTGTCTCTTATAC1190.1114159184323125No Hit
ACACGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1190.1114159184323125No Hit
TGATGAGGGGGCCTACAGATGGGCTCTGCCAGTGCCCTCTCTACTCCACTCT1180.11047965021019222No Hit
GTATCAGGGACTTACCATGTGACTTTTTATTACCAAATGCATCAGTAGTGGA1180.11047965021019222No Hit
TTGCAGAGGGCATGTTTCTCACATTGCTGTATTTTAGAAAATAGGGGTTAAG1180.11047965021019222No Hit
CCTCATGGGATATCATAGTGGCCCAGGTGGAGGATCTAATTAAACTAAAAAG1170.10954338198807194No Hit
CATAATGGGGAAGAAACAACATGATTTATTAAAAAGAATGTTACAACAGCAG1160.10860711376595167No Hit
TCAACAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1160.10860711376595167No Hit
CATCAAGGGGAGGCAGTTCAAATTCTCACCACCTTCTTTTCTCTCTTACAGC1150.1076708455438314No Hit
TTTGGCTGGGAGGCATTTGGTTTGCTTCCATCTTTTTTTATGCAGTGCCTGT1140.10673457732171111No Hit
AGTGATGGGTAATTTCTATTATTCCAAGTTCTTCGATTTGATTTGTCTAATG1140.10673457732171111No Hit
CTTACTGGGATATGATCCTATATCTAGAAAACCCTGTCATCTCAGCTCAAAA1140.10673457732171111No Hit
TCTTCAGGGAGGCGAGTCATACTCTTGCAAGTAGTTAGCAAAGGGAGGCCCA1130.10579830909959084No Hit
GCGCTGGGATCGCCAGGGAGCTGGAGCGTGTGGAGCAGCAGTCTCGGCTGGA1130.10579830909959084No Hit
TACGCTGGGGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTT1130.10579830909959084No Hit
TTTACTGGGTGTTGCGTTAGGGAGAATTGAGGATTGTGTGAAAGTTACCAAA1130.10579830909959084No Hit
TGATTTGGGGTTGCTGTTTGTATTTCTTTCACAGTTTTGATAATATCACATC1120.10486204087747059No Hit
CACATTGGGTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAG1120.10486204087747059No Hit
GACGTGGGGCACAGGCACTTTTAATGAAAAAGGCATCATCTAAGTTTAAAAA1120.10486204087747059No Hit
GAAGTAGGGAGAGCCGGAACCGGGTCACGGGAGAGGCTGGAAACGTTTTGAA1120.10486204087747059No Hit
ATTCGAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1110.10392577265535032No Hit
GCAAGCGGGAACCAGATACTGTGAGTGCTCACCTGATTCTTGGTTCTTCTGA1110.10392577265535032No Hit
GACGATGGGAGGGGAGTCTTCTAAGAATTAATAAATCATAACTTGTTTATGA1110.10392577265535032No Hit
GCCAAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1100.10298950443323003No Hit
TCCTAAGGGCCGTCTTTATAGATTTTCCTTTTCTGGATACTTCGTACAAATA1100.10298950443323003No Hit
AATTGCGGGTATGTGCTTCCAAGTTCTGCTTGCTTTAGAAATCTTTACATTT1100.10298950443323003No Hit
TAAGGCGGGGGACCGGGCGGGCGGAGCCGGGCCCGCGGGGCTGCTGCGGGGC1090.10205323621110976No Hit
TGAAGCGGGGGCTGTAGTGGCTTCGTCTTCGGTTTTTCTCTTCCTTCGCTAA1090.10205323621110976No Hit
CTATTGGGGGAGAAACTACAAAAGAAAGTTGTCCTCGTCCTTCCCCTTAGCT1080.10111696798898949No Hit
ACAAAAGGGCCAGTTTCCATCCTAATAGGAATGAAATTAATTTTGTATCTAC1080.10111696798898949No Hit
GAGCATGGGGCCCAAGAACTATCAAACTCCTGAGCCAACAACTTAATATGAC1080.10111696798898949No Hit
ATAGCCGGGATATTGGTTTTAAAAAGTCTGCATAATCACTAGGTGGCATTTT1080.10111696798898949No Hit
CACACAGGGGATTTTTCATCACTTTCTCTTTAGAAAAAAAGTACTACCTGTT1070.1001806997668692No Hit
GTGTCCGGGTGAAGAATAAATGTTTCAACTTTGGATTATGAAACCCCATTTA1070.1001806997668692No Hit
AGGTGGGCACAGTTTACATTTAGAAGTTTTGCTTAAAATTATTTTATGTTCT1070.1001806997668692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)