FastQCFastQC Report
Sat 31 Dec 2022
SRR5847058.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847058.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130630
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGCCGTCT11520.8818801194212661No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGC9100.6966240526678404No Hit
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCCTGTCTCTTATAC1940.14851106177753962No Hit
CCTCCTGGGGGCATTCATATTTTTAGGACTGAATTCAAAGGGAAATGCTTCT1910.14621449896654673No Hit
AGACAAGGGTATTGCTATAATTCACATTTACTGAAGAACTTGTGGACTATTG1910.14621449896654673No Hit
TTGTCGGGGGTTGTAAAAAGGAAGAGACCACTGATACATGCAACAACCTGAA1850.14162137334456099No Hit
CACCTTGGGAGTTTCAGACAAAACAGACTTTAAGCCAACAAAGAAAAAAGAC1770.13549720584857997No Hit
CTAAATGGGCACTGTCATTTTAGGTGTATTTTTTTGCAGAGTACAACATGTA1750.1339661639745847No Hit
TTAGGCGGGTGAGCCAATTCATTTAATTGTCAAATGTCTATATCCATGGTTT1740.13320064303758708No Hit
AGCGGTGGGGAATGCTTTGAAAGAAACTAATCAGAATCTTGGAACATCATGA1730.13243512210058944No Hit
GCGGACGGGGTGATGGAAAAGGACTGAATGATCCAATAAAGAAGACTTGGTG1720.1316696011635918No Hit
TCCGTGGGGAGAGAGAGAGAAAGAGAAAAAAATATATAACAGATGAAGCAAA1710.13090408022659422No Hit
CACGCAGGGAGCTCCATGCCAGTGGATCCAGGCCCCAAGCTTACATTCAGGG1670.1278419964786037No Hit
TCTAATGGGATAAACATTTTGGTAAAAATTACGTAAGCAACAAAATGAATTA1660.12707647554160606No Hit
GGCATTGGGCGGAAAGCAGCAGTGTACCAGTGTCACTCTGGAGTACAGCGGG1660.12707647554160606No Hit
GAACTAGGGTGCAAGATTCAAAACTGAAATATGTGTAGCTTTCTTACTAGCA1650.12631095460460842No Hit
TCGAGACGGGTGGTGAAATGTCATTGCTATGATTATAGGTCCCCAATGATTG1630.12477991273061317No Hit
TTCTATGGGTATTTCCAACACTTTACTTTCAGTCTATGCACATCCTTAAATC1620.12401439179361555No Hit
CAGTTTGGGAAGAGAACCTGGGTATCATCTAATTAGCCCAACGGTGACAAAT1590.12171782898262268No Hit
GTGGCGGGGTTGGTGATGATGTGGGCAAATCAGACTAAGCTTTTAATGAATA1580.12095230804562505No Hit
AGCAATGGGCTGTAAATACCTCAGTAATATGGGTCCTTTCATTTTTCCAGCC1580.12095230804562505No Hit
AAGAAAGGGCTTGATAGAAATATCTGAAAAACAGTTTTGTCATACAGTCCAT1560.11942126617162979No Hit
GGACTTGGGCAAAGCTTGCTATGTGAAAATCCCCACATAACCATTGAAGTTT1550.11865574523463217No Hit
CTCAATGGGGTGATTGTACAAAAGGAAGCTGATACTTGTTTCTGGCCAGTAC1540.11789022429763453No Hit
TTTCATGGGGTGTCAGATTCTGTGTCTGTGTCGCCTCAGTTTCCTTATCTGT1530.1171247033606369No Hit
ATGATGGGGTAAGACGGAGGTCACTGGTGACCACATTCCCACTCCGCAAGAC1520.1163591824236393No Hit
GGTAGCGGGCTATAAAATTTCATTCACATTTCCTCCCTTCTCCCACATCCTT1510.11559366148664167No Hit
ATCACTGGGATTTCATCTATATTTTTGGATCGACTTCTCCTCCCCCATCTTC1500.11482814054964403No Hit
GTTCAAGGGGGGACACTGTGTAGAGTCACCATTCAGAAGACTTGGCGAACTG1500.11482814054964403No Hit
GACTAGGGGGAAGCCTGTACTGCCTGCAGAACCATGAGCCAGTTAAACCTTT1490.11406261961264641No Hit
ACGCATGGGGTGCTCTGTCCCTCATGAATAAAAATGTTCAGTTTCTCGAAGA1490.11406261961264641No Hit
ATTTAGGGTTTCTGACTCCTGGAAGGAACTGGGCAGTCCCACCAGAGCAGAA1490.11406261961264641No Hit
GAACTAGGGTGTGAATACCCAGGGGCCTTCACTGTTCAGTGTCACTAAGAAG1490.11406261961264641No Hit
TGTGCGGGGCACCTTCAATGTTGAGATATAAAAGTTTGAAACGCTGGAAGAG1480.11329709867564877No Hit
CGCCAGGGGTATCAGGAGACCAAAAAGAAATAATATCTTATGATGTAAAAGA1460.11176605680165352No Hit
GAGCAAGGGGGTGAAAGTGCAAAATGAAATCTCTTGTTCTTTTCTTTGGTCA1440.11023501492765826No Hit
GCCTATGGGCGATCTGACAGGGGGGATAATGCAGGACTATCAAGAAGTGAAA1440.11023501492765826No Hit
CTACTAGGGGAAATGAAACATGGCATGCAGTGATCCGGGTGTTCAGTTCTCC1430.10946949399066065No Hit
CGCATAAGGGTACTCTCAAGTCACTAACCTTCCTCTTTGATCTCTTTGTAGG1430.10946949399066065No Hit
AAGCGGGGATGTAATGGAAGCCAAATTAAATTGATACAGAACCCATTTCTCA1420.10870397305366303No Hit
GTTGTCGGGATTGTTTAAAGTGATTACATTTAACGTCCTCTCCCATGACTTC1410.10793845211666539No Hit
GCACAGGGGTGTGTGGTCAAGTGGATAGTTGTACTCTTGCAAGTTGGATTTA1400.10717293117966777No Hit
GTAACAGGGTAGCCAGATCTGTATTACCAGCCCAGTTCTCACTTATTTTCCA1400.10717293117966777No Hit
AATGCTGGGACAACCATTGAAGGAACGTCAGATGACCTGACTGTTGTAGATG1400.10717293117966777No Hit
AAGGCGGGGAGCGTCGCAGCAACTGAGACCAGGAAAAGTCTGCCCCGGCTGG1400.10717293117966777No Hit
CTACTAGGGGACTTTGTTATAGGTTTAGGCAATGGAGTTGTGTTATGGGACA1400.10717293117966777No Hit
GAGAGTGGGAACGCGGGAGCTGGGAACATGTGCATCCGTGACTCAAATTTTT1390.10640741024267014No Hit
ACCTCTGGGGAGGACAGGTGTGTTGGGCGTGTTGAGAGCCTTGAAGTGACTA1390.10640741024267014No Hit
TGTGCTGGGATTACAGGCATGAGCCACCATACCTGGCCATGCGTTCATTTCT1390.10640741024267014No Hit
TTCAAAGGGGAATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCAT1390.10640741024267014No Hit
CAAAATGGAGGCAATGTTCTGAAACTAAATTTATTTTTGTTCAGTGAACATA1380.1056418893056725No Hit
CGTGTTGGGCATGTGAACAGCATAAGTTTGGAGCACTAGTTTGATTATTATG1380.1056418893056725No Hit
TGTATAGGGAACTGAGTGAAATTATTAAGGCATGTAATACATTAATGAACAT1380.1056418893056725No Hit
TATTAAGGGGGAAATACTAGCTACCCTGAAAAACCAGTTGTTTGGTAATTGA1380.1056418893056725No Hit
ATTAAGGGGATACAGCCGCGAGGCTAAAAAACGGATTTCCTCTTCCTAGCTT1370.10487636836867488No Hit
TGGTGCGGGACTGGTGGTTCTGAGCACATAGACGCCTATTAGTCCTTCTGGT1370.10487636836867488No Hit
ATGATGGGGTAAAAACCAGCATTATGATTAACTTTTTTTTATAACTTTTATA1370.10487636836867488No Hit
CGACAAGGGATTGCAAGAGGCGAGTTTAAAATTCTGCAGATGGCCTTATTTG1360.10411084743167726No Hit
AATTCAGGGACCTGGGCCAGTGGCGGGAAGGCCTCGGCAAGCTCTTCAGCTT1360.10411084743167726No Hit
CATCAGGGGATTACAAATAACAAATATACGAACCCACGTTCTATATTTTGTT1360.10411084743167726No Hit
AAAATACATAAGGGACACAAAAAACTCAATAGCAAGGAAACAAAGAATCTGA1350.10334532649467962No Hit
TGTAATGGGGTACAGAATGGACTCAAAAAGGCAAATTTAAGGGTTATTGGAC1340.10257980555768201No Hit
TGTACTGGGACCTGAGGTAGAATTTAGAATTACTGCCCATTTTAAGAGTGTG1340.10257980555768201No Hit
GGGCGAGGGGTAAACCTACGCGATTAATCATCAGTGTACAGTTTAGGACTAA1340.10257980555768201No Hit
ATGCGAGGGCATCAATGCCCAGATACAGATGAACAAGTATCAAGAAAATCCA1340.10257980555768201No Hit
GCATACGGGACTGTTAAACGTGTGACAGGAAAATCGAGTTGAGACTGCCATG1340.10257980555768201No Hit
ATATAAGGGCTTGTAAGCACCCCAAAGAGTCTTCCAAGAATATTATATCTTT1340.10257980555768201No Hit
TCCACTGGGCGATCTGTTTCTGGGCAATCCCAACCTGATGAGCTTTATTACA1340.10257980555768201No Hit
GGCTGTGGGATTCCGAAAGTTAGTTATGAAGTACAATCCAGGATTAAGGTGG1330.10181428462068438No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCCTGTCTCT1330.10181428462068438No Hit
ACAAAGGGGTAGATAAGGGCCTTGGATTCCAACACAGTTTCTTCCACATCCC1330.10181428462068438No Hit
GAGTTTGGGACTGTTTAACACATTAACCTGAGAGGCACAGAATCTCATAAAA1320.10104876368368676No Hit
TCTAACGGGATTTCCTTGTAGCTTTATTCCTTGCATCTTTGGGTCTACTGAG1320.10104876368368676No Hit
CACCACGGGTGAGCAGGACTTTCCTTATCCCAGTTGATTGTGCAGAATACAC1310.10028324274668912No Hit
TTTCAAGGGTGTCTAGGTTGAGATATTTAATCCCTCATAGAGCTATATTTGA1310.10028324274668912No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)