FastQCFastQC Report
Sat 31 Dec 2022
SRR5847056.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847056.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128713
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGCCGTCT11320.8794760436008795No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCTCGTATGC8570.6658224111006659No Hit
AGCGGTGGGGAATGCTTTGAAAGAAACTAATCAGAATCTTGGAACATCATGA1990.15460753770015462No Hit
CCTCCTGGGGGCATTCATATTTTTAGGACTGAATTCAAAGGGAAATGCTTCT1820.1413998586001414No Hit
TTTCATGGGGTGTCAGATTCTGTGTCTGTGTCGCCTCAGTTTCCTTATCTGT1730.13440755790013442No Hit
CAGTTTGGGAAGAGAACCTGGGTATCATCTAATTAGCCCAACGGTGACAAAT1650.12819217950012818No Hit
CGTGTTGGGCATGTGAACAGCATAAGTTTGGAGCACTAGTTTGATTATTATG1650.12819217950012818No Hit
GCCTATGGGCGATCTGACAGGGGGGATAATGCAGGACTATCAAGAAGTGAAA1640.12741525720012742No Hit
CTAAATGGGCACTGTCATTTTAGGTGTATTTTTTTGCAGAGTACAACATGTA1640.12741525720012742No Hit
AGCAATGGGCTGTAAATACCTCAGTAATATGGGTCCTTTCATTTTTCCAGCC1640.12741525720012742No Hit
TCGAGACGGGTGGTGAAATGTCATTGCTATGATTATAGGTCCCCAATGATTG1620.12586141260012587No Hit
TTAGGCGGGTGAGCCAATTCATTTAATTGTCAAATGTCTATATCCATGGTTT1580.12275372340012276No Hit
CTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCCTGTCTCTTATAC1570.12197680110012196No Hit
TCCGTGGGGAGAGAGAGAGAAAGAGAAAAAAATATATAACAGATGAAGCAAA1570.12197680110012196No Hit
GGCATTGGGCGGAAAGCAGCAGTGTACCAGTGTCACTCTGGAGTACAGCGGG1540.11964603420011966No Hit
GGCTGTGGGATTCCGAAAGTTAGTTATGAAGTACAATCCAGGATTAAGGTGG1540.11964603420011966No Hit
CTTGATCAGGGAAGCTCACTGCTCCAAGAGGTATGCAAGGTAAAAGGAAACA1520.1180921896001181No Hit
AAGAAAGGGCTTGATAGAAATATCTGAAAAACAGTTTTGTCATACAGTCCAT1500.11653834500011653No Hit
CAGCATGGGAGTCGCAATAGTGTACCTAGTTAAATATGGCTTTATTTTTGGA1490.11576142270011576No Hit
AGACAAGGGTATTGCTATAATTCACATTTACTGAAGAACTTGTGGACTATTG1490.11576142270011576No Hit
ACCTCTGGGGAGGACAGGTGTGTTGGGCGTGTTGAGAGCCTTGAAGTGACTA1480.11498450040011499No Hit
GGACTTGGGCAAAGCTTGCTATGTGAAAATCCCCACATAACCATTGAAGTTT1480.11498450040011499No Hit
CTACTAGGGGAAATGAAACATGGCATGCAGTGATCCGGGTGTTCAGTTCTCC1470.1142075781001142No Hit
AAGGCGGGGAGCGTCGCAGCAACTGAGACCAGGAAAAGTCTGCCCCGGCTGG1450.11265373350011267No Hit
TCTAACGGGATTTCCTTGTAGCTTTATTCCTTGCATCTTTGGGTCTACTGAG1440.11187681120011186No Hit
ATGCGAGGGCATCAATGCCCAGATACAGATGAACAAGTATCAAGAAAATCCA1440.11187681120011186No Hit
ATGCCAGGGACCATATTTTTATTAGTCTCATTTCCTTAATTTTTACTACCTC1430.1110998889001111No Hit
CACCTTGGGAGTTTCAGACAAAACAGACTTTAAGCCAACAAAGAAAAAAGAC1430.1110998889001111No Hit
TTGTCGGGGGTTGTAAAAAGGAAGAGACCACTGATACATGCAACAACCTGAA1430.1110998889001111No Hit
CGCCAGGGGTATCAGGAGACCAAAAAGAAATAATATCTTATGATGTAAAAGA1430.1110998889001111No Hit
TGTGCTGGGATTACAGGCATGAGCCACCATACCTGGCCATGCGTTCATTTCT1420.11032296660011033No Hit
AAGACCGGGAAGAAAATGCATTTTAAACACAACTCTTCTCAGTAGCATTTTA1410.10954604430010953No Hit
TCTAATGGGATAAACATTTTGGTAAAAATTACGTAAGCAACAAAATGAATTA1410.10954604430010953No Hit
TGTACTGGGACCTGAGGTAGAATTTAGAATTACTGCCCATTTTAAGAGTGTG1400.10876912200010877No Hit
GAACTAGGGTGCAAGATTCAAAACTGAAATATGTGTAGCTTTCTTACTAGCA1400.10876912200010877No Hit
GGTACAGGGAGAAATTTAACATTTTTCTAGCATTTTAAAATAAATTTGAAAA1400.10876912200010877No Hit
AAGCGGGGATGTAATGGAAGCCAAATTAAATTGATACAGAACCCATTTCTCA1400.10876912200010877No Hit
CGACAAGGGATTGCAAGAGGCGAGTTTAAAATTCTGCAGATGGCCTTATTTG1390.107992199700108No Hit
TGTAATGGGGTACAGAATGGACTCAAAAAGGCAAATTTAAGGGTTATTGGAC1390.107992199700108No Hit
GCTAGGGGAATAAGGACACAGGAACCTTTGTCTGTTTTATTTACAGATATAT1390.107992199700108No Hit
ATGATGGGGTAAGACGGAGGTCACTGGTGACCACATTCCCACTCCGCAAGAC1380.10721527740010721No Hit
GCTGCCGGGGCAGGGAGGTCTGGTTTGGTTTTCATCAGTCTGTGAGACCTGC1380.10721527740010721No Hit
TTGAGAGGGAGGAAGGGCCGGAGGCTGCACGGCGCTGCAGCAGAGTCTGTGT1380.10721527740010721No Hit
GCTATTGGGCAGAACATAATCCTTTGGGTCTTTTATTTATAAAATAGGGCTA1370.10643835510010644No Hit
GTGGCGGGGTTGGTGATGATGTGGGCAAATCAGACTAAGCTTTTAATGAATA1370.10643835510010644No Hit
CTCAATGGGGTGATTGTACAAAAGGAAGCTGATACTTGTTTCTGGCCAGTAC1370.10643835510010644No Hit
ATCTTAGGGTCCATTGTTTGAGGTGCTTGCAGTTGTCTTAAAAATTAAAGTG1360.10566143280010566No Hit
GAATTGGGAGATCCTGAGAGCTACAATGCAAAAAGGTCTTTCCTATAGCACA1350.10488451050010489No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAATCCTGTCTCT1350.10488451050010489No Hit
ACTTGAGGGCTGAATTTTTGAAAGACTATTGCAGGTGTTTAAAAAGAAAGAA1350.10488451050010489No Hit
CGCATAAGGGTACTCTCAAGTCACTAACCTTCCTCTTTGATCTCTTTGTAGG1340.1041075882001041No Hit
GAGAGTGGGAACGCGGGAGCTGGGAACATGTGCATCCGTGACTCAAATTTTT1340.1041075882001041No Hit
AGTTTTGGGGAATTACTAAAACTTTAAAAAATATTTTTCTTATGTATGCTGT1340.1041075882001041No Hit
GCATACGGGACTGTTAAACGTGTGACAGGAAAATCGAGTTGAGACTGCCATG1340.1041075882001041No Hit
GTATGGGGCCCCCACAACAGGCCCCAGTGTGTGATGTTCCCTTTCCTGTGTC1340.1041075882001041No Hit
GCATCAGGGCACCAGAACTAATATACCAAACAACCAACCAACCAAAGAAAGC1340.1041075882001041No Hit
AAGCGGGGGACTAGAATCCAAAGGAAAAAAACCTGGTATTATCAACGAAGAA1330.10333066590010333No Hit
TTTCAAGGGTGTCTAGGTTGAGATATTTAATCCCTCATAGAGCTATATTTGA1330.10333066590010333No Hit
GGGCGAGGGGTAAACCTACGCGATTAATCATCAGTGTACAGTTTAGGACTAA1330.10333066590010333No Hit
GCGGCCGGGACTGAAAGATTTTTTTAATGCTTTAATTATAGATTTTTTTGCT1330.10333066590010333No Hit
CAAAATGGAGGCAATGTTCTGAAACTAAATTTATTTTTGTTCAGTGAACATA1320.10255374360010257No Hit
TCATAAGGGTGTTGTGTGTGTGTCATTTTTATTACATTTGCCATGCTTAAAT1320.10255374360010257No Hit
TATTTTGGGTATTGAACATAAGTAAATTCATTTTGGACAAGAGCCTTATCTA1310.10177682130010177No Hit
TACTAAGGGATGAGCATTTTCTTTGATTGTCAAGTTAACACTCAAAAAGTTT1310.10177682130010177No Hit
ATCACTGGGATTTCATCTATATTTTTGGATCGACTTCTCCTCCCCCATCTTC1310.10177682130010177No Hit
TGCTTAGGGGAAATAAAGTTTGCCAGTTCACACATGTTGTCATTAATTTGAC1310.10177682130010177No Hit
AATGCTGGGACAACCATTGAAGGAACGTCAGATGACCTGACTGTTGTAGATG1310.10177682130010177No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACAGCGAAAACTCGTATGC1310.10177682130010177No Hit
AAAGCAGGGGTTCTCTCCCATATCTGTGATGTGTTTATATTATTTATTTTGT1300.100999899000101No Hit
AGCTCAGGGAAGCACCTGCTTAGTTTGCGCCTTGGTTAATCCAGCACTGCAG1290.10022297670010023No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)