FastQCFastQC Report
Sat 31 Dec 2022
SRR5847040.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847040.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99753
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC3520.3528715928343007No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT3480.3488616883702746No Hit
GTTTACGGGAAGATGGAATTCTGACCAATCACCTTTCCAAACAAAAGGAGAT1670.16741351137309152No Hit
CAAAACGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT1540.15438132186500658No Hit
TCATGGGGGACGGCTGCTTCGACATCTTCACCACGGAGGAGGACCACCCATT1500.15037141740098042No Hit
ACATCCGGGCAAGCAGCGGCGGAGCTTCGCCGACCGCTGTAAGGAGGTACAG1340.13433179954487584No Hit
CGTTAAGGGAAGATGACAAGTTTGTGTTATTTTAGGTCACTTAGTTTGTAGA1330.1333293234288693No Hit
CGTTATGGGCGATCTAAGCTTGGGTGAATAAATGTGACCACCTTATTTCCAC1330.1333293234288693No Hit
ATCGGGGGGTAGAGGGAACCCCTGCCAGCAGAACCCAAGACCCCAGCAGCCC1230.12330456226880394No Hit
CTCTAAGGGGTAAAGGCTCATCCAAAATACTTGAGTTGTATTGCAATCAGCT1200.12029713392078434No Hit
TAGCAAGGGGAGCGGGCTTCAGCGAGCCGCAGGAGGCACAGGCCTGTCCTGG1170.11728970557276473No Hit
CTTGCGGGATCTCACAGAGGGACGGTGCTGTCGGTGCAGCAGATCGGCGAGG1140.11428227722474513No Hit
GTATCTGGGTTGACTTGATCATGGCACAGAAAAGGAAGGCTCTCCTACACAA1130.11327980110873857No Hit
AAATCTGGGAAGTGATGTTCTGGTGGAGGTAGACTGAAATTTTTTTAATTCA1120.11227732499273205No Hit
CACAAGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGTC1120.11227732499273205No Hit
ACTAACGGGTGTCCAGAAATTGAAAAGGAAAGAATATTTTTCATTCTCATTC1120.11227732499273205No Hit
CGCTGTGGGGGGCGGGGACCATGTTGCTTCCGAACATCCTGCTCACCGGTAC1110.11127484887672552No Hit
ACACAGGGGGCAGGGACTGGCGGGACTGCGCGGCGGCGACTACAGACGTGTC1100.11027237276071897No Hit
TCTCATGGGCCAGGCTGCTTTCCGTGTCTTCAGTTCTGTCCAAGCCATCAGC1100.11027237276071897No Hit
GTTATAGGGGGACGGAAGCTTCGCGTGGGAGGAGGCGGCGGCGGCGGCAGCG1090.10926989664471244No Hit
CGATAGGGGAACCCAAATAGCATGGTACTGGCATAAAAACAGACACATACAG1080.10826742052870592No Hit
TATGATGGGTCTCACAAAGGGGAACTGGTGTCTGACGACCCCCGCTGCCGCC1080.10826742052870592No Hit
CGTTAAGGGAAGTGGATGATAGCGATTGGGTAAATTAACTCTACATTGATAT1070.10726494441269936No Hit
GAACCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAGAATTAAAGAGAAAC1070.10726494441269936No Hit
TCGCACGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGG1060.10626246829669284No Hit
GGCGATGGGCTGACATCGGGAAGGATCAGAAACTCAAAAAAGATCTAACAGA1060.10626246829669284No Hit
ACCAAAGGGCTTCAATCTACTCTTCTGCTCATTTTGTAAGCAAGAGTCTCAA1060.10626246829669284No Hit
CTACCGGGGGGATTTGAGAACAGTGTTACTCTGAGCAGTTGGGCCACCTTCA1060.10626246829669284No Hit
CACATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1060.10626246829669284No Hit
ACATTGGGGAGGGCGGGGAATCGCGTAATGGCGGACACAGGCAGGGCGAGCG1050.1052599921806863No Hit
CTAGCCGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGG1050.1052599921806863No Hit
ACTTGTCGGGGAAGCACCTGGCTTACAGCAAGCACACTACTGCTGAGGAGGT1050.1052599921806863No Hit
TCAATGGGGGAAAAAGGGAATTTTAAGCAGGGTTACTCTAATACATGAGTCT1050.1052599921806863No Hit
GCTTTTGGGAGACAAGACTAGGTCTTACAGATCTGTCACACTCCATTTCTTT1050.1052599921806863No Hit
GTACCGGGGGAGGAAGTGTCGGCGCCGCCACTGTCCGGCCACAGCCTAACGC1040.10425751606467976No Hit
GACAGTGGGATTTATTGAAGGAAACACACAAGTCCAAACTAGAACAGGGTGA1040.10425751606467976No Hit
TATGCTGGGATTATAATCTTGTCAAATAGAAATGTTGCTTCTAGAAAATTTG1030.10325503994867323No Hit
AATACCGGCGAAATTTATGGATTTTTTCTCTTGTTCAGGTAAGGCATATTAT1020.10225256383266669No Hit
CTTGTCGGGGGAGACTGCGGGACGGACGGTGGACGCTGGGACGCGTTTGTAG1020.10225256383266669No Hit
GCTCCAGGGACAAGTAGTTCTTAGTTAACCACCAATGGAACTGGGTTCATTC1020.10225256383266669No Hit
AGGTAGGGGGCTCTTCCGATCTATATATGGGGCCGTCACCTAGGCTGGAGGC1010.10125008771666015No Hit
CTATGAGGGAAGTAGCAAATCTGAAGATAGGCAATGTCAAACCCATGAAAAT1010.10125008771666015No Hit
TGAGGCGGGCTCACTACAGTTTATATTTTTATAGGCTATTTTCTCAAGGTGT1010.10125008771666015No Hit
TTATCTGGGAGCTGCCTTTATTTTATTGAAAAATGTCAACAGAAGGCGTAAT1010.10125008771666015No Hit
TGGCAAGGGCATTATCTCTTTTCCAGTATTAAACACTCATATGCTTATGGCT1000.10024761160065361No Hit
AGTAGGGGGGTTCCCAGGACGGGCGCGTCTTCAGGGTGGAAGCCTGGCGCAC1000.10024761160065361No Hit
ACGGGAATGAATGAAGACCAAGGACAGGACAGAAATATCTGGGGTGCACTCA1000.10024761160065361No Hit
CGTTTGGGAGCTCAAAATTTATTGATAGTGCCCATCAGCTTTTCTATAAGCC1000.10024761160065361No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)