FastQCFastQC Report
Sat 31 Dec 2022
SRR5847039.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847039.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100212
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC3570.3562447611064543No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT3190.3183251506805572No Hit
GTTTACGGGAAGATGGAATTCTGACCAATCACCTTTCCAAACAAAAGGAGAT1420.1416995968546681No Hit
CGTTATGGGCGATCTAAGCTTGGGTGAATAAATGTGACCACCTTATTTCCAC1330.13271863649063984No Hit
ACATCCGGGCAAGCAGCGGCGGAGCTTCGCCGACCGCTGTAAGGAGGTACAG1320.13172075200574782No Hit
ATCGGGGGGTAGAGGGAACCCCTGCCAGCAGAACCCAAGACCCCAGCAGCCC1290.12872709855107173No Hit
AGTTCTGGGGAAGTCAGAGATGCCTCTGACATTCCTGCATTTATCCATTCAG1290.12872709855107173No Hit
CTTCGTTCGGGATTGTTGTGGTGTGAGGGAAAAAATAAACATGGCTTGAGTT1260.12573344509639564No Hit
TCATGGGGGACGGCTGCTTCGACATCTTCACCACGGAGGAGGACCACCCATT1250.12473556061150361No Hit
GGTGCGGGATGAAAGTGAGGGTCTGTTGTGTTATCTTTTAAGTACTGGATTT1240.12373767612661157No Hit
CTGATAGGGAATTCAGCGGGGATATATAGATGCACAGTAGCGAACTACAAAC1220.12174190715682753No Hit
GGTTAGGGGGTAATCATGAGAGGTGTTACAGCTGTTAAATACTTTCCACCTC1210.1207440226719355No Hit
ACATTGGGGAGGGCGGGGAATCGCGTAATGGCGGACACAGGCAGGGCGAGCG1190.11874825370215145No Hit
CGTTAAGGGAAGATGACAAGTTTGTGTTATTTTAGGTCACTTAGTTTGTAGA1190.11874825370215145No Hit
CAAAACGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT1170.11675248473236738No Hit
CTTGCGGGATCTCACAGAGGGACGGTGCTGTCGGTGCAGCAGATCGGCGAGG1170.11675248473236738No Hit
ACTTTTGGGAGACGAGGGCTGGTCTCCTTCACATTTGTGTGGGGGTGGGGGC1150.11475671576258334No Hit
ACACAGGGGGCAGGGACTGGCGGGACTGCGCGGCGGCGACTACAGACGTGTC1140.1137588312776913No Hit
CAAGCTGGGATCAGCTTCAGTGACCCAGGGTCTGAACTGCCTCCATCCTAGG1140.1137588312776913No Hit
GTACCGGGGGAGGAAGTGTCGGCGCCGCCACTGTCCGGCCACAGCCTAACGC1130.11276094679279927No Hit
CGCTGTGGGGGGCGGGGACCATGTTGCTTCCGAACATCCTGCTCACCGGTAC1130.11276094679279927No Hit
TAGCAAGGGGAGCGGGCTTCAGCGAGCCGCAGGAGGCACAGGCCTGTCCTGG1120.11176306230790724No Hit
ACTAACGGGTGTCCAGAAATTGAAAAGGAAAGAATATTTTTCATTCTCATTC1110.1107651778230152No Hit
CTAGCCGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGG1110.1107651778230152No Hit
AACATAGGTGTCTTTGCTTATAGCATTTTTCTCTAACCTATAACAAGGAGAC1110.1107651778230152No Hit
GTGCTTGGGACCCTTCATGAAGCACTGAAACTACTGCCACCTGCTCACTGCG1100.10976729333812317No Hit
TGGCAAGGGCATTATCTCTTTTCCAGTATTAAACACTCATATGCTTATGGCT1100.10976729333812317No Hit
CACAAGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGTC1090.10876940885323114No Hit
TACCTAGGGCTGGAAGAGCTTTATCTCTCTGTTTTCAGATCCATGAGCTTTA1090.10876940885323114No Hit
CTCTAAGGGGTAAAGGCTCATCCAAAATACTTGAGTTGTATTGCAATCAGCT1090.10876940885323114No Hit
TCTCATGGGCCAGGCTGCTTTCCGTGTCTTCAGTTCTGTCCAAGCCATCAGC1090.10876940885323114No Hit
TACTAGGGGATAATTATATTGTATGTTCTACAAGTATAAAATTTCAGAAAAT1090.10876940885323114No Hit
GCTGCAGGATACACATTGTTTTCCTCAGCACATGGACCATTCTCAAGGAAAC1080.10777152436833913No Hit
CTACCGGGGGGATTTGAGAACAGTGTTACTCTGAGCAGTTGGGCCACCTTCA1080.10777152436833913No Hit
GCTATCGGTCAGTACAAGGAGGCCATAGATTTGGGGCAAGAATTGAGGCTGA1080.10777152436833913No Hit
TCAATGGGGGAAAAAGGGAATTTTAAGCAGGGTTACTCTAATACATGAGTCT1080.10777152436833913No Hit
AGCCAAGGGTATCATCATCTGATTCATCTTCTTCCTTCAGAGATTCCTGTTA1070.1067736398834471No Hit
CCGTGGGGAAAAAAAGAGTTGGATAAATAACATTCAGACAGCTCAGTAGATT1060.10577575539855506No Hit
TTAATTGGGGGTCCCCAGCGCGGAGCCCCGCCCCGCAGGCTGCCGGGGGCCC1060.10577575539855506No Hit
ATCGCCGGGTAAGAGACCTGTTTTAAAAAGGAACTGCAGCAATCTTTGAAAG1050.10477787091366303No Hit
TTGTAGGGGAGGCGCAATTTGAAGGCATACAAACTAAAAACAGTATTTTAAA1050.10477787091366303No Hit
GTAAGTGGGGAGTTTCGATTGTTAACGTGTTTTTGTTTGGGAAGTAATTTTG1050.10477787091366303No Hit
GAATCTGGGGCTTTGGTTAGATGTTATAAATTAATCAGCTTAATATTTATGC1050.10477787091366303No Hit
CTTGTCGGGGGAGACTGCGGGACGGACGGTGGACGCTGGGACGCGTTTGTAG1040.10377998642877101No Hit
CGTTAAGGGAAGTGGATGATAGCGATTGGGTAAATTAACTCTACATTGATAT1040.10377998642877101No Hit
CTCACGCGGGGTATTTAAAAGAAAATTGAGAGAAAGGACTACAGAGCCCCGA1040.10377998642877101No Hit
GATGCGGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAG1040.10377998642877101No Hit
TCTCGTGGGGAGGCTGCTCTCAGGCGTTCTGTTCCGGGCGAGGCTTGTGCTG1040.10377998642877101No Hit
AAATAGGGGCATGATTAGCATGTGTGACAGTATCCTTCACTGAGTAACCCTT1040.10377998642877101No Hit
TGCTGAGGCTTCCTTAAAGTCAGATATCTTTGCTTTATTGATTTATGCATCC1040.10377998642877101No Hit
TAATATGGGCTGAAACACCTGTTAGGGGTTCCCTCCATATGTCAGAGCCTCT1040.10377998642877101No Hit
AAAGTAGGGATCAAGCAAAATGACAGGGGCTTCAAAAAACAACCAAAGACAA1030.10278210194387898No Hit
TGCCATGGATCCTGAATAACCATATACCCCCAAAAAAGTACAGTTTGGCTAC1030.10278210194387898No Hit
GAACTAGGGGCAAAAATCAGTTGGCTGCAAATACATAGATTTATTTCTGGGT1020.10178421745898694No Hit
AGCAAAGGGATTTCATGATAAGTACAGTAGAGATTTAGGCTCAGCTAAAGTG1020.10178421745898694No Hit
ACCAAAGGGCTTCAATCTACTCTTCTGCTCATTTTGTAAGCAAGAGTCTCAA1010.10078633297409492No Hit
TTCCCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1010.10078633297409492No Hit
CTGTAAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1010.10078633297409492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)