FastQCFastQC Report
Sat 31 Dec 2022
SRR5847038.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847038.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99378
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC3330.3350842238724869No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT3180.31999033991426673No Hit
CGTTATGGGCGATCTAAGCTTGGGTGAATAAATGTGACCACCTTATTTCCAC1660.16703898247096943No Hit
GTTTACGGGAAGATGGAATTCTGACCAATCACCTTTCCAAACAAAAGGAGAT1560.15697639316548934No Hit
CGTTAAGGGAAGATGACAAGTTTGTGTTATTTTAGGTCACTTAGTTTGTAGA1410.14188250920726922No Hit
ATCGGGGGGTAGAGGGAACCCCTGCCAGCAGAACCCAAGACCCCAGCAGCCC1330.13383243776288514No Hit
TAGCAAGGGGAGCGGGCTTCAGCGAGCCGCAGGAGGCACAGGCCTGTCCTGG1290.1298074020406931No Hit
TCATGGGGGACGGCTGCTTCGACATCTTCACCACGGAGGAGGACCACCCATT1270.12779488417959708No Hit
CACATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1210.12175733059630904No Hit
CTCTAAGGGGTAAAGGCTCATCCAAAATACTTGAGTTGTATTGCAATCAGCT1200.12075107166576105No Hit
ACATTGGGGAGGGCGGGGAATCGCGTAATGGCGGACACAGGCAGGGCGAGCG1160.116726035943569No Hit
CAAAACGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT1150.11571977701302098No Hit
ACTAACGGGTGTCCAGAAATTGAAAAGGAAAGAATATTTTTCATTCTCATTC1140.11471351808247299No Hit
GGTTAGGGGGTAATCATGAGAGGTGTTACAGCTGTTAAATACTTTCCACCTC1130.11370725915192496No Hit
CTACCGGGGGGATTTGAGAACAGTGTTACTCTGAGCAGTTGGGCCACCTTCA1130.11370725915192496No Hit
ACATCCGGGCAAGCAGCGGCGGAGCTTCGCCGACCGCTGTAAGGAGGTACAG1130.11370725915192496No Hit
TCACACGGGTATTGGTGGAATCATTGTAGCATCTGTGCTGGTATTCATCATT1120.11270100022137697No Hit
TACTAGGGGATAATTATATTGTATGTTCTACAAGTATAAAATTTCAGAAAAT1120.11270100022137697No Hit
GGCGATGGGCTGACATCGGGAAGGATCAGAAACTCAAAAAAGATCTAACAGA1110.11169474129082894No Hit
TACCTAGGGCTGGAAGAGCTTTATCTCTCTGTTTTCAGATCCATGAGCTTTA1110.11169474129082894No Hit
TAGTGTGGGTGAAATGGCTTTATGTCACAGAAGACTTTAATCCGTCAAATTC1090.10968222342973295No Hit
ACTTGTCGGGGAAGCACCTGGCTTACAGCAAGCACACTACTGCTGAGGAGGT1090.10968222342973295No Hit
TTTGCAGGGTAATAGCTTTGGCTTAGATGCCACAGGAACTTTCTTTTCTCGT1090.10968222342973295No Hit
CAGCCTGGGCAACAGAGGGAGATCCTATCTCAAAACAAAACAAGTCGTTAAT1080.10867596449918493No Hit
CACAAGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGTC1080.10867596449918493No Hit
ACGCTTGGGAGGCACACTTTTGCCAATCCCACACCAGGGAAAGCTATAGTCT1080.10867596449918493No Hit
CTTGTCGGGGGAGACTGCGGGACGGACGGTGGACGCTGGGACGCGTTTGTAG1070.10766970556863693No Hit
GCATTAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1070.10766970556863693No Hit
CTGATAGGGAATTCAGCGGGGATATATAGATGCACAGTAGCGAACTACAAAC1070.10766970556863693No Hit
ATGGCTGGGACCTTTCCAACTGGAATATAGGTATAATGTCTAAGTTTATATC1060.10666344663808891No Hit
ATCGCCGGGTAAGAGACCTGTTTTAAAAAGGAACTGCAGCAATCTTTGAAAG1050.10565718770754091No Hit
ACACAGGGGGCAGGGACTGGCGGGACTGCGCGGCGGCGACTACAGACGTGTC1050.10565718770754091No Hit
GTAATCGGGAATGTTCCTAAATGGCGCAGCCAATCCAGGCTTTTCAGAAACT1050.10565718770754091No Hit
TGACCTTTTTTCCCTCTGGTTTGAGAAAACTTTGGACACTATTTCTACTTGG1050.10565718770754091No Hit
GCATCGGGTTGATTTTCAGAGACATTTACCACCCTCTTTATTGGATTTTAAG1040.10465092877699289No Hit
GAAATGAGGCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTAAAACTA1040.10465092877699289No Hit
TTAATTGGGGGTCCCCAGCGCGGAGCCCCGCCCCGCAGGCTGCCGGGGGCCC1040.10465092877699289No Hit
AATGCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1040.10465092877699289No Hit
AAAGTAGGGATCAAGCAAAATGACAGGGGCTTCAAAAAACAACCAAAGACAA1040.10465092877699289No Hit
GAACTAGGGGCAAAAATCAGTTGGCTGCAAATACATAGATTTATTTCTGGGT1030.1036446698464449No Hit
CAGTTGGGACCTAGATTTACCTGATGGTTTGGGGGCAAGATTTTCTGTTTGC1030.1036446698464449No Hit
GTTCCTGGGGCATATATGTGCTTTAAAAATATTAATCCTTTTGAAAAGAACT1030.1036446698464449No Hit
AATACTGGGTGCAAGAGGGAGTGAGATTAAGATCGTCCTTATTGTTTCTAAA1020.10263841091589687No Hit
CTGTAAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1020.10263841091589687No Hit
GATATGCGGGCAGTTGCTTACAGTGGTGTGAAAAACTCTTTGAAGGAAGCTA1010.10163215198534888No Hit
AAATCTGGGAAGTGATGTTCTGGTGGAGGTAGACTGAAATTTTTTTAATTCA1000.10062589305480085No Hit
TCGCACGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGG1000.10062589305480085No Hit
TTCAACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1000.10062589305480085No Hit
GAGCAGGGGAGTACATAGCACCAGGCCTTGTAGATTTAAGGCACACGCACAG1000.10062589305480085No Hit
ACGGGAATGAATGAAGACCAAGGACAGGACAGAAATATCTGGGGTGCACTCA1000.10062589305480085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)