FastQCFastQC Report
Sat 31 Dec 2022
SRR5847032.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847032.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142815
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC8290.5804712390155096No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT7390.5174526485313168No Hit
GCTGAGGGGATGTGGATTTTTGAAAATAAATATATTGGAAATATTTTTTGAG2010.14074151874803068No Hit
AGTTTGGGCGATCTATTCGGGGGATGCTTATGTGGTTGTTCAGTTTGTTCCC1830.12813780065119212No Hit
TCATCAGGATCCTATGTGAGAGAAAAATTGTATTCATTACGAACAAAAAACC1760.12323635472464375No Hit
TAAATAGGGGCAGCAATTCCTTATTCTTTAATCATATCCTTAGGGTATTTAG1750.1225361481637083No Hit
CACAGTGGGGTCCGATCTATAGGAGGGCTATGAAAGTTTCTGTATAACAGGC1730.12113573504183735No Hit
CACACAGGGGGTGATGGAACTATAACAACAAAGGAATTGGGAACTGTAATGA1670.11693449567622448No Hit
GGCTATGGGCAGACTTCCCAATTTTAAATCTGGTTTCCCCCTGAATATGTGG1670.11693449567622448No Hit
TCTCAAGGGGAAAACTAAGGAGAGTCGTGAAGCAGTTGAGAAAGAATTTGAG1660.116234289115289No Hit
TAGTTGGGGACGTGAAAAAATGCTCATTATCTCTGGCCGTCAGAGAAATGCA1650.11553408255435353No Hit
TTGTCGGGGGAGCTGCCAGAATCCTCTCTAAGGCTTTCATAAATTATTAAGA1630.11413366943248258No Hit
GACAATGATAATTTTGTGTTGGATCCCTATTCTGGAGTCATAAAGTCAAATG1620.1134334628715471No Hit
TACAAAGGGGGGGAAAAATCCTAAAGCTGTCTTCCAAAAGGAAAGGTAAAAT1610.11273325631061164No Hit
GAAGCAGGGAGGGGCAGGGAAGGGGGTGGTGGAGCCCAGTGAGAGTTGGAGG1600.11203304974967615No Hit
TCAAGTGGGCTGGAGTGGAATACAATAATCTAGTTGTATGCAATGATGCAAT1600.11203304974967615No Hit
AGGCTTCTCAATCAGGAAAAATCAGAACTGCTTGTTGAACAGGGTCGTCTAC1590.11133284318874068No Hit
TTGCTTTGGGAGGGGCCAGGATCCAGTTCCCTCATCTCTGGCAGGAAAGATC1570.10993243006686973No Hit
AAACAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1570.10993243006686973No Hit
TAGCTGGGGACCACGGTCCAGAGGGGCAGAACGGGCGGCGCTTGCCTTGCCC1560.10923222350593426No Hit
TGATTTGGGCAAAAACATTAAACAGAAGAAATCATTTTTTTGCTATGTAATA1550.10853201694499878No Hit
CTGGTCGGGAAGCCAGAACCTTACTAAAGTAGAGGGCACGATCAGTGTGAAT1540.1078318103840633No Hit
TTTACCGGGACCTCAGAAAAACACCTTAAAGGGAGGAAAGGGAACAGTTTTT1540.1078318103840633No Hit
GTACTAGGGATAAAACTTAAAACTTTACAGTCAGAGGTTCAATTCCTCTTCT1540.1078318103840633No Hit
TTGCGCGGGGGTACATGTATCTGCATAACTCATTTTCAAAAACATCTCTAGA1540.1078318103840633No Hit
GCCGTAGGGAATGAGGGATCTGAAGGAAACGGCCCCAGAGTCACCCATCCCC1540.1078318103840633No Hit
ATGCTGGGATGACTCCTTCAAGGAAAAGAGGCCCTGCTCCCTTTACCTGCTG1520.10643139726219235No Hit
TTTCATGGGAGTTACATTGGTTTTAGATTGTGGTTTCCACATCACTGTAATA1520.10643139726219235No Hit
TAGCTAGGGAGCTAAGTGATTATGTCAGTTTATTTAATTTTGTCTAAGAACT1500.1050309841403214No Hit
CGTAATGGGAGACAGGGTTACCTGGTGAGGTGCAGAGAGTCCCTCTAGTGGC1500.1050309841403214No Hit
CCTCTTGGGAAGCCTTCCACTGTTAGAGATTTGAGGTTACATGATATGCTTT1500.1050309841403214No Hit
TGCGATGGGGTTCTAAAGGGACAAAGAGAGGTCCACCGTTTATATCAGAGAG1490.10433077757938591No Hit
TATCATAGGGACAAGAAGCAGAATTCTTTCAGCTCAAGGGACTGGCAGAGGA1480.10363057101845044No Hit
TAACACGGGGATCTGGAACCGGGTAACATTTACTTTTTTAAATTTCAAAACT1470.10293036445751497No Hit
TCTTATGGGATAGTTGCAGTAATCCACTGGAAAGATATTTCCTGGTGAAACA1470.10293036445751497No Hit
GGAATCAGGGATACTACAATATTAAGAAATGCCTTAGTACATAAGACTTGTA1470.10293036445751497No Hit
GTTTAGGGGAGGATTTGTTTATAGAAGTGCAGGCATTCTGTATTGAATTCAG1470.10293036445751497No Hit
GATTGTGGGGTTGGAATAGGATGTAAATAAGTGGAGGTGGGCATTGAAAGTT1470.10293036445751497No Hit
TTACAAGGGGACGCTCTTCCGATCTGTAATAGGGAAGGCAAAATGTCAAAAA1460.1022301578965795No Hit
CAACCTGGGAGAGCCTTTATTCTGTAGCCAGACGACACGAGGAGTCTGTGTC1460.1022301578965795No Hit
AGTGCGGGGAACTGACGGCAACATGTAAACACTCGAAAAGCAATGACACTAT1450.10152995133564402No Hit
TAAGAAGGGAGCCAACTACGTAACCATGAATTAAAGCGTATACTATTTTCTT1450.10152995133564402No Hit
CAATGTGGGATGGTCCATTCAAAGGAAAAAACAAAATCCCCAGAAATAGTCT1450.10152995133564402No Hit
ACTAGGGATTGTAGCCAGGAAATGATAACCGGTTCAAAAGCTCTCCTTTAAG1440.10082974477470853No Hit
CACTTAGGAGCTAAAACTTTGACCAAAGCTTTGGTCACTTTATGCAACCTGG1440.10082974477470853No Hit
ATCTAAGGGGCTAGTTTCTTAGGGTAAGTTTTAATTTTAATAGGCCCAGGTC1430.10012953821377307No Hit
CGAATAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1430.10012953821377307No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)