FastQCFastQC Report
Sat 31 Dec 2022
SRR5847017.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847017.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84642
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT7600.8978993880106803No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC6850.8092908957727842No Hit
AGAGAGGGTGGGTCTCTGAGTCTGAGAAGGGATACCGCAGCATTCACGTCGC2360.27882138890857966No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTGTCTCTTATACA1740.2055717019919189No Hit
AACGGCGGTTCTGATCGGGGCCACGGTGATCGGCCTGATGAACCGGTTCGCC1660.19612012948654334No Hit
TGTTCAGGGAATTCTGTGGGCGTGTACTGCTGTGATAAGATGTTTGTTCTCT1520.17957987760213606No Hit
AGGTTAGGGGCACTCGCGCAGACCTAGCGCGTCCAGGTGGGAGGTTAGTGTG1480.17485409134944827No Hit
ACAAACGGGACACGACGCTCTCCGATCTAGCTCGGGATTCTAAGGATATGCT1480.17485409134944827No Hit
TAACCGGGATCTGAGATTGTTCTAGAAACTGATGAGGAAAGAGTCGTACTAA1410.16658396540724463No Hit
GGGCGGGGAAGTTGCTGGATAATACATGCACTATGATCCTATTTCTGTAAAA1400.16540251884407267No Hit
ATTCACGGGATATTAAGACAGTGTACAAAACTGTAAATAAAATGTGTACAGT1390.16422107228090074No Hit
ATCAAGGGGATACAAGAGCAAAATTCAAGTAATACAAATATTTAACATTTTG1380.1630396257177288No Hit
GGATGGGAAGAGTAAAGTAGACACTAATAAAGCACACCCTGACAATAAGGCA1380.1630396257177288No Hit
GCAAGGGGAAAGACAGAGATGGGAAAACAAAGCAGGTATCTAGTGGATTAGA1370.16185817915455686No Hit
TTGTACGGGGCTGCCGGGAGCTTTACCCAGCGTCCTGTGAGCCTCAAAACCA1370.16185817915455686No Hit
AATGGCGGGAGTTGCAGGTAATTTTTTGTCTGCTAGTAGTGTTCTAGATTAT1360.1606767325913849No Hit
ATTACGGGAAGAAATGAAGATATGCATTTCCAGTTCCAGAGAGAAATTCACA1350.15949528602821295No Hit
AAATAAGGGGAAAGTATCTTGGTCTAGTGCAGTATTCTGATTTTCTCTTTTT1340.158313839465041No Hit
TATATAGGGTGGCATAAATCTAAGAAGAAGGCCTTTACCAAGTACTGCAAGA1330.15713239290186903No Hit
GTATGCGGGAACCTCTGCCTCCTGGGTTCAAGTGATTCTTCTGCTGAGGCAG1330.15713239290186903No Hit
ATTGAAGGGAACAAATAGAAAGAAGAAAGCCTGTAATCTGTTTCAGAATGCT1320.1559509463386971No Hit
TAACTTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1310.15476949977552515No Hit
TTCGTTGGGAGCTGAAAAGTAAATTGCCTTCTAGACACTGAAGGCAAATCTC1300.1535880532123532No Hit
TCTTGCGGGGATATTTCAGATGGGCTTTTGATGCACTGTTGCCAAGGAAGGC1290.15240660664918126No Hit
AACAGTGGGATGGCCAGCAATCCTGTTCCCCCTCAGCATCCTGATTTAATTT1290.15240660664918126No Hit
ATAACTGGGAAACTTTAGTTTTGTCAAATTTTTTTCTATTGCTTTTTTGGTC1270.15004371352283738No Hit
ACTATTGGCTACCGAGGGGAATATAAAATTGTTTAATCACTTCCTGCATGTT1260.14886226695966542No Hit
CTTAACGGGATTGAATGAATAAAGAATATGTGGTATATATACACAATGAAAT1250.14768082039649347No Hit
AGTAATGGGCATGTGTTCTCATGTCTTTTTGCAGATTTAAAGGTTTTATTGT1240.1464993738333215No Hit
GTTTATGGGATTGCACTCCAGCCTGGGTGACAGGGCGAGACTCTGTCTCAAA1240.1464993738333215No Hit
GCATATGGGATTCATAGTAAATGCCGTATACAGATGTATCATCTTTAATCTT1230.14531792727014958No Hit
AAAGTCGGGACTGGATATCAAAGATTATTTGGAAAAGAAAAATAAAATCTCT1230.14531792727014958No Hit
ATATCAGGGAATCAGCATGCTCCTAGTGAAAAAAAGAGGAGATATAATAACA1210.14295503414380567No Hit
TTCAGTGGGTCGCTTTCATGCATGGAGGAGGGGAATCTACGCAAAGAAAGGC1210.14295503414380567No Hit
TTAATGGGGCTAGGAGTTTGAGGCCAGCCTGGACAACAATGTGAGATTGTGG1190.14059214101746179No Hit
CTGTCGGGGAAAAAATCTAGATGTAATCAAGAGCTGGATTTGTCTTCTGATG1180.13941069445428983No Hit
TCGTCCAGGGAGGCCCCAAGTTATTTTTTAGCAATCTTACGAGTGAAATGTT1180.13941069445428983No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTGTCTCTT1180.13941069445428983No Hit
TTTCTGGGAGTGATAAGGAAGGAAAAAGGTAAAAATACAGTATACTTCACGA1170.13822924789111787No Hit
TCAAACGGGAGCTGCTCTGCAAGGTTGAGGGGCCATCACAGGGCGCCTGGCT1170.13822924789111787No Hit
ACAGAAGGGACAGAAAACCACTGATAGTATTTGTTGCCAATGATAAAATTTA1170.13822924789111787No Hit
TCACTGCGGGACCAGCAGCCAATCAGATAACTCCAGTCGTGTTTATACTTCT1150.135866354764774No Hit
TCGCGGGAGTGTTTGGTTTGGAAACCATCGCATATTAAATTATTCAGCAACT1150.135866354764774No Hit
GGTTACGGGATTTTATTTGAATATAAGTTTAAGGAGTGAGAATGGAGAGTTG1140.13468490820160206No Hit
ACGCTCGGGAACTCTTTTAATTTATATACAAAGCAAAGAACAACATTAATGG1140.13468490820160206No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCCTGTCTCTTATAC1130.1335034616384301No Hit
ACCGTAGGGACGTTTAATTTAACAAACTATAGACCAAATACTTCAAGTTTTT1120.13232201507525815No Hit
CTGGCATGGGAAATTCCATAATGTGCCTTATCTTTTCATTGCAGGATGACAG1100.12995912194891424No Hit
GAAGTGGGGCAGACCCTGCTCGCCGCTCCATATGACGGCGGCATCGACAGCG1100.12995912194891424No Hit
AAGCTGGGGATAACTTGTGTGATTTCAAATTAAACTTGCATTATGTGTTAAT1100.12995912194891424No Hit
GAGCACGGGAAGACCATCTTATTCATTTTAATAGTTAATTATTGAGTTAATT1100.12995912194891424No Hit
ATAATAGGGAAGGACAGTTTAACATTACAAATGCTATAAATACTTCATAATT1100.12995912194891424No Hit
ATTGCAGGGATTTTTGATGATGTTAGCAGCTGTTGATGCTCAGTGACTAGAT1100.12995912194891424No Hit
TTTCAGGGGGCTCCCAGTGTTTCCATTTCATGTTTTAATTCTCATTTTAAAA1100.12995912194891424No Hit
CTAGCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1090.1287776753857423No Hit
CGTAATGGGAGTATATTTGAAGAGATTTCCAAAAAATATAAACAACATCAGC1080.12759622882257035No Hit
AAGTCAGGGGACGCTCTTCCGATCTGTTTATGGGATTTCAATTGTACTTTTT1070.1264147822593984No Hit
AACACTGGGAACTTCCAGTTGGTTATATGGAAGATATGTAAGATAAAACTGA1060.12523333569622647No Hit
AAGTCCGGGAGTTGGGCCCTGTACCATCCCAAGTCCTTTGTAGCTCCTCTTG1060.12523333569622647No Hit
TGCAAAGGGAGAGGCTGCCCCGGAGGATGCCGCAAGCTCCCCCTAGCCTCTG1050.12405188913305451No Hit
CTCAAGAAGGGAGAACATGACTTTTAAAAATGGAAGGGATTAAAAATCCTTT1050.12405188913305451No Hit
ATCTTAGGGACTAAAAATTTGTTCCTTTTTCACTATGGGCAGTTCACACAAG1050.12405188913305451No Hit
ATATAAGGGACTATGGGCAGTTCACACAAGGCAAAAACTATTGAACAGTTGG1050.12405188913305451No Hit
TTCAATGGGCAGATGCCATCTTCTGGCTTCCTCAAGGAGCCAGTTAAAAAAC1040.12287044256988258No Hit
CATACAGGGATAGACTTTGATTTTAGCATCCTGTCTTCCATTAAGTTTCCCT1040.12287044256988258No Hit
CGTTTTGGGATGCCTCCTCTGGCTTCCTCATGTAAAGCAGTAGTAGTTCATT1040.12287044256988258No Hit
TAGGCCGGATGTGTTATCTGATATTGTCTACCTTTTCTGCTATTGGTGCCGC1040.12287044256988258No Hit
AATATAGGGATGACACACTAGGGAGTTGTGGCAGGCCTGAGAGTCTCCTCAG1030.12168899600671063No Hit
GTGTAAGGGAAGGATGTTTTTCTTTATTTTTGTTAATATTAAAAAGTCTGTA1030.12168899600671063No Hit
CTTGCAGGGGGAACCGGCGATCTGGATGTGTGCGTGCAGGTCACAGGGGATA1030.12168899600671063No Hit
AGTTCGGGACTTCTAAATGGAAGGGAAAAAGTTACCCACACAAGTTAGAAAA1020.12050754944353867No Hit
AATGCAGGGAAGTTATGGGCAAGTCACTGAACCATGGGCCATCAGTTTCATT1020.12050754944353867No Hit
GTCGAGGGATGTACTGAGCACCTACTAAATACCCAAAATTATGCTAGAGTGG1020.12050754944353867No Hit
GATCGGGAAGATTTGGAAGCAACCTAAGTGTCCATCAGTAGATAAATGGATC1020.12050754944353867No Hit
TTTAGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1020.12050754944353867No Hit
AACTGGCGGGACCCACTTAAATGCTTAGCTTTTCTTGTAATTTCATCAAGAA1020.12050754944353867No Hit
TTTATTGGGAACATATACTTGGCAATAAGTCACAAAAACATTCGTATTTTTT1010.11932610288036673No Hit
GTGCGAGGGAGAATTGTTAATACCTTTACCCTTCTCTTGAACACATCAAAGG1010.11932610288036673No Hit
GATGCTGGGATATCAAGGATCTTTTAAATTATGCCACTACAGGATGTATCAT1000.11814465631719477No Hit
GCTTAAGGGATATTACAGTATGTTAAACATATGTTTTCTCCAAGCACCACCA1000.11814465631719477No Hit
ACTGCGGGGACTCCAAACCCTGTGCTCCTAGCCCCAGTGTTGTTCTTTCTAA990.11696320975402281No Hit
GGTCTGGGAGTTTGAAAAGCCTAATATTTATTTGTATGTCAATATTTTTCAT990.11696320975402281No Hit
GAGTACGGGATCCACTTTCTGTATCTATAGATTTGTATATTCTGGACATTTT990.11696320975402281No Hit
TCTCAAGGGGACTGTAAGTCTGAACTACAGAGCCATGGTGCTTAACTGATAA990.11696320975402281No Hit
AATACGGGGCACAGCCTCGTCTGGAAAAAGGACCAGGGGTCCCGGAGGAACC990.11696320975402281No Hit
TCGACAGGGATGGGCAGGTTGAAGGTTAGGTAACACTGACTGGAGGACCGAA980.11578176319085089No Hit
ATTGATGGGCAAGAGAGAAGATTCCAATTCTAAAAGTATTCGATGCAGAATA980.11578176319085089No Hit
AATCGGGGGATCAGTGGAGTGGAAGGTGACTTGCTTGGCCCTTGTTCTTTTT980.11578176319085089No Hit
TACTCAGGGAGTACCATAATCTTAGAGACAAACCTTAAAACAGCTGTTTTTA970.11460031662767893No Hit
GTTGACGGGACTCACTCGTGTCTCGCTACCAGCTCCCCGCTGCCCTGCGCTC970.11460031662767893No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAACTGTCTCTTATACAC970.11460031662767893No Hit
CTCTAGGGGAATCTCTAAAACCTACAAAGCTTCCTGCTACATAATTGTTTTG960.11341887006450699No Hit
CATTCTGGGGTTCCATTGGTCTATGCTTCTATTTTTGTACCAGTACATTGTT960.11341887006450699No Hit
ATACTAGGGACGCCCCAAATAGCTTCCGTTTGGGCCCTTACATTCACAGATA960.11341887006450699No Hit
CCTTAAGGGAAGCCATCGTCATCATAGGAGACGACAGCTCTGTGCCTGTTAT950.11223742350133503No Hit
GAAACTGGGATATAGGCAAATTTTCTCTTTACATGAAATGCTTACCTATATT950.11223742350133503No Hit
AGTAAAGGGAGGTAGCAGTAGTGTGTGCTGCTATTGTGGAATATACGTGTGT950.11223742350133503No Hit
AAAGATGGGAGTACTGTACTAGGAGTTATTATTCAGATTTATTTACCCACAA950.11223742350133503No Hit
TACTGTGGGACCCAGAGGCCTGCTCTCCTCACACATTGTGTGGTTTGGGGTT940.11105597693816308No Hit
GCTGCAGGAAGAACTGTCCATTAAGCCTAATGGAATACCAAACTGTCTTCTG940.11105597693816308No Hit
ACAATAGGGATTTATTTTAATCTTAATATTTTTACATTATTATATTGCATTA940.11105597693816308No Hit
ACTGCAGGGATCTCAGAAGATGGCGTACAAAACTATTTTTCTAACTATAGCA940.11105597693816308No Hit
GTAAGCGGGAGAGCCCTTCCCATCACTGACAGTGTCGGGTTGAGAGCCACCC940.11105597693816308No Hit
GTTGCGGGAGATTTTGGAAATATTCATCCTGCAGGATTCTACTTGTTTTATT940.11105597693816308No Hit
AAATGAGGGATTTAAAACTCTGAATCTATTCCATTGATCATGTTAGACGTTC930.10987453037499115No Hit
GAACTGGGGTTCTGGTGGAGACATTACAGTTTTTTGTATATGGTTATGTCAT930.10987453037499115No Hit
TTGTTAGGGCTGCATCAGCCACTTCTAAAAATTCCAATGTAGTTATTAATAA930.10987453037499115No Hit
GTGCCTGGGAGGTCATTTTCATAGCCTGTTTATTTTGTAGGTCTAATTTAGT930.10987453037499115No Hit
TTGACAGGGGATCTCCTGCAGGGAAGTAACAAGCTTCTAGAGGGCCCGGTAA930.10987453037499115No Hit
ACGCAGGGGACATCAAAGAAAGAAAAATATAAGCCAATACCCCTGATAAACA930.10987453037499115No Hit
GTAACTGGGGATCTGCTACGGGGATGCAAGAACTTATCTATAAACACATACA930.10987453037499115No Hit
TAATGTGGGTGTGCTCGGGAGGCGTGAGCCACCGCACCCGGCCATGTATACT920.10869308381181919No Hit
CTTGCATTGGGATTGCCATATAGCATTTGAAGCTGTACAGTAGAGCTTATTA920.10869308381181919No Hit
TACGCTGGGATTTGAAATAAGTTATGGCTTAAAATGCTTTTGGAGTTTATTT920.10869308381181919No Hit
ATTAAAGGGAGGAACTTATGTGTGGGCTACATAAAATTTGGTGTTGAGGGAG920.10869308381181919No Hit
GTACTGGGGAACATTTAGCTGTATGATTTTGTCCTCGTTGTTGCCTAAAACG920.10869308381181919No Hit
GAAGCGAGGGCCTCTTAGCCTGTTGCCTTTAGCTCCCTAACAGAGCTTTGAC920.10869308381181919No Hit
TTTGGCGGGATGGCTTTATTTGTTTTTTTTGTTTTGTTTTGGTTTTTTTTTT910.10751163724864725No Hit
TAATGGGAAGATATATTCTTTTTGGTTTTAAAATGCAAAATCTTATTGGCTG910.10751163724864725No Hit
AGATCAGGGAAGAGACCTACTGTCCGAAAACATTGTTACATACATTATTTTT910.10751163724864725No Hit
TTTTGTGGGATACTTAATTCTGTTGGGTGTTTCCGCCCCCGCCCTCAGCTTC910.10751163724864725No Hit
TACGCAGGGACCGAAGGGCATCTTATAAGGGAGGTGGGGGAGGCGGGGTCAT910.10751163724864725No Hit
AAAAGTGGGACAGCTGAGCAGTGTTTCGGCGATGGCTTGAACTGGGCTGGTT900.10633019068547529No Hit
AAAGTCAGGAGAGCAATCTGCTGCCAATAGAGTTTGGAGGTGGATATTTAGT900.10633019068547529No Hit
TTGGTAGGGATTTAGATTTTGTGGTGGCTAATTTAAACCATGTAAAATAAAA900.10633019068547529No Hit
GTAATTGGGAGGGAAAGACTGATGAAAAGTAAAATGGACTACTTTTGTAACT900.10633019068547529No Hit
AAACAAGGGACTGTGGTTTTGATTTGCATTTCTCTAATGATCAGTGATGTTG900.10633019068547529No Hit
TAAACTGGGAGCTGAGTAGGACTAATGTAGAAGAGTGGAAACCCCTTCGGCC900.10633019068547529No Hit
TGCTCCGGGATAAGGCTCATGATATAGGAAAAGGAATATAGGGCTAAAAATA900.10633019068547529No Hit
ACGGGTGGGAGAGATGGGGTTCTCTTGCTGTCTCTCTGGCTGATTCCACGCA890.10514874412230334No Hit
AGTCTCGGGATTATAATCAATTTGCAAAGAAAATTGCTGAACCCTTGTTTTT890.10514874412230334No Hit
AGTCATGGGCAGGTAACTGAAGATTTTGTGTCTCCAGAACATCTTGTAGAGT890.10514874412230334No Hit
TTGCTCTGGGAACTTTACTAAATTTGTTTATTAGCAGAACTATATTCTTAAT890.10514874412230334No Hit
AACACTGGGGATCTGTGAAAGGGATTACTATACTAGGGTTATACTGAAAGGA890.10514874412230334No Hit
TGATAGGGAGTTGTCTAACATATTGCCACTGTCTACATGAGCATAACTTAAT890.10514874412230334No Hit
CCGCAGGGGCACACCAATCCCCTCAAGTCGTTGCTGACTTCTAAACTGCATG890.10514874412230334No Hit
TGCCATGGGCCTGGTTGGCCAGGTATAAATGAGCTTTACAAAAGTGCAAATT890.10514874412230334No Hit
ATTAACGGGAAAAGCACTATGGCAGATTAACACTTTCTCAGACCTTGTAATT880.10396729755913141No Hit
AGCAACGGCATAGGGTCCGAGGTCACCGTTCAGGCAGCTGGAAGGAGAGAGG880.10396729755913141No Hit
CTTCATGGGGGAGGCGAGGACTAGATTATTCTCTTTAGTTCCCCCAAATTTT880.10396729755913141No Hit
AATGCTGGGAGAGCTCTAAAACACAAAGTATTCTGAAGAAGTAGGTAACTGT880.10396729755913141No Hit
TTCTATGGGAGATAAAATGATATGAAATGATGAGATGAATGATGAGATGAAA870.10278585099595945No Hit
TCTAAGGGGACGTCAGTAAAATACTAAAAGGCTCATTTTTATATTTGTTTTA870.10278585099595945No Hit
ATGGTGGGACTTTGACTCTTGAATGTGTCACTTTACTGGCAAGAGACTTCCT870.10278585099595945No Hit
ATGCTGGGGAATAAATTCTGGCGTGGTTTCCCTCCAGATTTTATTTCTCATT860.10160440443278751No Hit
GCCAGCGGGTCCTGATGAGAGAGAAGATGGTGCCAAGGCTGTCTTTGTATAA860.10160440443278751No Hit
TAAAGCTGGGAGCATAAGCCAATTTCCATTAAAAATTATATATATATACACA860.10160440443278751No Hit
CAATGAGGATTATTTGTGAGCTTTAATAGGCCAGTGAGTCTTGAAGAGAATA860.10160440443278751No Hit
GTCTGCGGGTAAGACTGTCTCAAAAACAAACAAACAAACAAACAAACAAAAA860.10160440443278751No Hit
CACACTGGGAAACTGAAATCTATAATTTTAAGGGCTTAACCTGTGACTTTAA860.10160440443278751No Hit
AGTTTTGGGAGAGATGATTTAAAAAGTTCAAACAGACATGGTCATAAAAGGA860.10160440443278751No Hit
TGACACGGGACTGCAAAAACATGCCAAATTGTAAAGACCATCAATGCTAGGA860.10160440443278751No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)