FastQCFastQC Report
Sat 31 Dec 2022
SRR5847011.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847011.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59926
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT4570.7626072155658646No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC3980.6641524546941228No Hit
TGTGGTTGGGGGCACAACTGAAGCAGCCTTGTCCCTCATTAGATGATCTTGC1070.17855354937756565No Hit
CTACATGGGCCGATCTTGGTGAGGGCCTTGACAGTTCTTTGCACACAAGTTT1010.16854120081433768No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTGTCTCTTATACA1000.16687247605379968No Hit
AAGTACGGGGCGAACGGCGAGCAGCGGCGGCGGCGCGGGAAGTGCAGCGGAG960.1601975770116477No Hit
TATCCAGGGCATTTCACATGAACTAACCCCATTTAAAAGAATACATTTTCCA960.1601975770116477No Hit
ACGCTGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC940.1568601274905717No Hit
TGAACGGGAGTGTGGGTGTGGCGGTGCTGGAGCTGCTCAATTTCCCGCCGCC900.15018522844841972No Hit
CGGCGCGGGTACCAGCCAAGATAGATAAATATGCCCAATAAGTATAATTGTT890.14851650368788172No Hit
CTACAGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC880.14684777892734374No Hit
CAGCCTGGGTGACAGAGCTCGACTCCATCTCAAAAAACAAAATAAACAAAAA870.14517905416680574No Hit
TAGTGACGGGAGGCACACTTAATACATTTTTTTTCAAGCGAAAGTGTCAGCA860.14351032940626773No Hit
TAAAATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC850.14184160464572973No Hit
AACCAAGGGAGGCTTAGAGAGCATTTATTTATCTGGCAGCTGCAGCATTTTG850.14184160464572973No Hit
TGTAACGGGATGATTTGGCTCTCTGTTTGTCTGTTATTGGTGTATGAGAATG820.13683543036411575No Hit
AAACCTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC810.13516670560357774No Hit
TGGTCTGGGATCTTTGCAGCAATTCCAGTAATAAAAAAATGCCCATTTCTTT800.13349798084303977No Hit
ACTGAGGGGATCCGGCCTGAGGCGCAGCGGTCGCGTTAGTTCGGCCCAATGG790.13182925608250176No Hit
CCATCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC790.13182925608250176No Hit
TCATTAGGGATCTGACTTTTCCACCATTTCTATCTGTATCAATTGTATTAAT790.13182925608250176No Hit
TAGTGCGGGAGGGATCCTGCCCCAAATGCGGTCGGAGCGCCAGTGACCCTGA780.13016053132196376No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCCTGTCTCTTATAC780.13016053132196376No Hit
TTTGGGGGAGGTCAAGCATCTTCGGCCGATATTTAAACATGGGCAGCTTCCT780.13016053132196376No Hit
TGTGCCGGGGCATACACATACATGCACACACACACGTTATCCCATGATGTTC770.12849180656142575No Hit
TCTCTAGGGACCAAATCAAAATCTCTCCACTTTCAGCTGTCTTTTGGAGGAC750.12515435704034975No Hit
AGGTCTGGGATACTTACTTGTATCCTGGCTTTGGCTAGCTAAAAATTCCCCA750.12515435704034975No Hit
TATTCTGGGCGATCTAAATTCGGGAGGATATAATGTGTTAACCTTTTGTGAT750.12515435704034975No Hit
AAGTTTGGGAGGCTCAATTTTGCTGTGAACATAAACTTCTCTAAAAAGTAGC750.12515435704034975No Hit
GTAGTGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC740.12348563227981178No Hit
GTGGATGGGATCCAAATATTTGCATTGCATACTATTTGTTAGCAGACAATAT740.12348563227981178No Hit
CTCACTAAGGGGGAATCTTTCAGTTATAATAATCATTGATCATATGCTAATG740.12348563227981178No Hit
ACAATGGGGAGAAGGTCACAACACAGGCCTTTTTCACTCAGCTTTGTAGGCA740.12348563227981178No Hit
AAAACGTGGGGGGTTCTCTAGAAACAAGAGCCTGACTGGAAATTAAGTGAAG740.12348563227981178No Hit
AACGAGGGGCAATAAAATCTGGGTTGATTTATAGTCCCATAGTTAATTCTTT740.12348563227981178No Hit
GACCTAGGGACCAGTCATAGCATTTACTTCTGCTTCTCCTGGATTATGTGCT720.12014818275873577No Hit
TATTTGGGAGAGCCATGCTAGAACAGGAATGAAAGGCTGTGTGAACCAAGCA720.12014818275873577No Hit
AGACCAGGGATGCACAAAGAGACCGATGTGAAACACAGTGTCAAATGAAGAA710.11847945799819777No Hit
ATGGCAGGGAAGCTAGAAATTCATGACAATGAGTATTACTATTTGCCTAATG700.11681073323765978No Hit
CATGCGGGACCCACTGTCATGACAACTGCTCCTTCTGGCCTTCAGATATGTC700.11681073323765978No Hit
GAACCGGAGCTCTCTTACAGTAAAATCAACCATTTTTTCTTTTGATATTATT700.11681073323765978No Hit
TTTTATGGGAAGATAGAGATTAATACAACTACTTAAAAAATATAGTCAATAG700.11681073323765978No Hit
AGTACGGGGGCGGCGGTGGTGGCGGCTGTCAGAGCTGGAGAGCGGCCGGCGG690.11514200847712178No Hit
GCGCTTGGGATGGCTTGTGCATGAGGGAGTAACTTTTTACAGGAATGTTTAT690.11514200847712178No Hit
CAATTTGGGAAGATTGTACTTGAAATGCTTTACATATATTGACTTTATTCAT690.11514200847712178No Hit
GTGCAGGGAGATTAAGAAATTTGGACTCTAGATCTTGTTTATATAGTGAGTT690.11514200847712178No Hit
CTTCTTGGGATCTCCAAAGATGTCATTGGATGTCATGTACCTACTAATACAA680.11347328371658377No Hit
GCTTTTGGGATAATTATTTTCACTTTTTAATTGCATAAACACACACACATAT670.1118045589560458No Hit
GGTCATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC670.1118045589560458No Hit
ATCTTAGGGCCAGCAGTGATGTCAAGTGCCCAGTGCCTTGGGGAACCGGCTT670.1118045589560458No Hit
TGCAAGCGGGAACCACAGAATACACATTCTATTCAACAGCACATGGAACTTT670.1118045589560458No Hit
TAGTACGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTTAC670.1118045589560458No Hit
GGAAATGGGAATGTGGCACTTTATGTCTCCATTTCTTCCATTCTTTTCCTTT660.11013583419550779No Hit
TTCGCTTGGGATCAATGTTCAGTTCAAAAGCCTGAAAGTTTAGATCTAGAAG660.11013583419550779No Hit
GCCTTGGGGATGCCCTGAGAGAATTTCTAGGGAAGTCATCTCACTTGGCCTT660.11013583419550779No Hit
TTCCGAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC660.11013583419550779No Hit
CAATTAGGGTAACTTACACCTTTAAAGAGAGACACATAGAGCAGGAATTTTT660.11013583419550779No Hit
TTTACTAGGGAGCTGATGCCTGAATGTATCCTAGCTGACAAATTATTGATTA650.10846710943496979No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAA650.10846710943496979No Hit
GATGCGGGATCAAAGTTTTCATAAAACTAGCTACAAAATCCACTTGGATTAT650.10846710943496979No Hit
CATCCTGGGGATGGATTTAATTCTTGATGCTGGTGCTAGAAGTAGGTCTTCA650.10846710943496979No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAACTGTCTCTTATACAC650.10846710943496979No Hit
CTCTATGGGCAGCTTGCGGGCATAATAAGCAACCTTTCTTCTCTCTGTTAAT640.10679838467443178No Hit
CATCTAGGGCGATCTCATTGCGGGACTGGGATTACAGGCATGTGCCACTGTG640.10679838467443178No Hit
TTGTATGGGAGAGTATTTTCATATATAAAAATCTTGTGCAATGGGTTGTTTT640.10679838467443178No Hit
CAAAATGGGATGTTAGAACAGGCTGTTCATTTCTCCTTTTGCATTGTCCTGA630.10512965991389381No Hit
CATAGAGGGAGAAACCTTGATTAGAAGTGGCGAAAGAAGGAAAGAAACTGTG620.1034609351533558No Hit
GACTACGGGTGATCTCGGTTTGGGAGACTTAGGGTTTATCTATTTTTTTTTT620.1034609351533558No Hit
GATGGGGGGCCTTCCATTTGGGCCCAAGTGTATATTTACCACCCAGTTGTGA620.1034609351533558No Hit
GTGAAGGGATAAAAGGATAGCACAAGAGATCCTTGTGGTGATGGACATATTC610.1017922103928178No Hit
TCGCGTGGGCGATCTACGTGCGGATTAAAATATGTTCATATGAGTCATCTGA610.1017922103928178No Hit
AGAGCTGGGATCTAATTTTAGTTGCTTTTTTCTCCCATGTCCTGATAGACCA610.1017922103928178No Hit
CTGCAGGGGAGTGTGTTAGTGTAGGTTTAGGCAGAAACCAGCCTGCTGCTGC600.10012348563227982No Hit
CCATGGGGGTTCTTCTCTAATTGAGACATCTGCAGTTGGGGTGACGGTGAAA600.10012348563227982No Hit
TGAGTAGGGAGGGCTCCTCCCTCCTACCTCAGGCCTGATCCATCGTGCCCTT600.10012348563227982No Hit
TACGACGGGATAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTA600.10012348563227982No Hit
ATCATAGGGAGGCCAAGTCAATCAAAGAACAAGTCAAAAAATTAGAAGACAC600.10012348563227982No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)